Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01716 ATGGAAGTGAAAAGGAAGCGATTTCCGCGGGTCATGACCGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAGGCCTATAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAACGAAGGGAGGATGATAATTCATGGAGTTTCAGTTGGAATGAAGATTCATTGCTTTTGCAGCTTAAAGATGGCTTACCAGAAGATATGGAGGTTCTTTACGTCGGTTCCCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAAGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGACATTTGTGGCCACTTTTTCATTATATGCTGCCATATTCTGCTGATCAAAAGGGTCGATTTGATCGTTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATTTACCGTACTCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGTAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGTTATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTCGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACTAGGGAACTCGCACAGCAATTTGCAGGAAAGACGGTGTTGCTTGGTGTCGATGATTTGGACATTTTCAAAGGTATCAACCTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAGTGGCAGGGAAATGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGTAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTATGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTATTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACATTGTCTGTAGACAGGGAATATCCACCTCCCAAAAATTTGTGAACTTCAGCGGACCCAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGCGGAGCATTTCGTGTCAATCCATGGAATCTTGAAAGGACAGCGGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAATTGCGACATGAGAAGCATTATCGTTATGTTGCCACACACGACGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTAGGGCCGAAAGTCGGGCCATTCTGTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAATCACCGAGTGAGCAAGTTATCTCTATCCTTAACACCCTTTGTGCAGATGCAAAAAATGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGTTTGCTTCTATGATCTCTCTCATGTGTTTCTATCCTCTCCTTCTCGTTAATGGTGGGTACAGGCGTTTCATTGAGAATTATCGCACAGTAAATATAGCTAGTTGTATCCACTTTTATGGATTTCTGTATCATATTGTGAGAATTATCTAA 2076 41.38 MEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFKCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELAQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGNAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPIIERVAYYSIAECVAVTAVRDGMNLTPYEYIVCRQGISTSQKFVNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNLERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRFASMISLMCFYPLLLVNGGYRRFIENYRTVNIASCIHFYGFLYHIVRII 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25258732 25260807 - Lsi11G017160.1 Lsi11g01716 674883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01716 691 Pfam Glycosyltransferase family 20 41 524 IPR001830 GO:0003824|GO:0005992
Lsi11g01716 691 Gene3D Glycogen Phosphorylase B; 34 294 - -
Lsi11g01716 691 Gene3D - 570 651 IPR023214 -
Lsi11g01716 691 Pfam Trehalose-phosphatase 574 643 IPR003337 GO:0003824|GO:0005992
Lsi11g01716 691 CDD GT20_TPS 41 524 IPR001830 GO:0003824|GO:0005992
Lsi11g01716 691 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 2 644 IPR001830 GO:0003824|GO:0005992
Lsi11g01716 691 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 41 527 - -
Lsi11g01716 691 Gene3D Glycogen Phosphorylase B; 295 508 - -
Lsi11g01716 691 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 2 644 - -
Lsi11g01716 691 SUPERFAMILY HAD-like 571 652 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01179 Lsi-Chr7:17303864 Lsi11g01716 Lsi-Chr11:25258732 0 dispersed
Lsi11g01716 Lsi-Chr11:25258732 Lsi06g01540 Lsi-Chr6:25744451 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01716 K16055 - csv:101209914 1281.93