Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01716 ATGGAAGTGAAAAGGAAGCGATTTCCGCGGGTCATGACCGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAGGCCTATAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAACGAAGGGAGGATGATAATTCATGGAGTTTCAGTTGGAATGAAGATTCATTGCTTTTGCAGCTTAAAGATGGCTTACCAGAAGATATGGAGGTTCTTTACGTCGGTTCCCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAAGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGACATTTGTGGCCACTTTTTCATTATATGCTGCCATATTCTGCTGATCAAAAGGGTCGATTTGATCGTTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATTTACCGTACTCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGTAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGTTATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTCGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACTAGGGAACTCGCACAGCAATTTGCAGGAAAGACGGTGTTGCTTGGTGTCGATGATTTGGACATTTTCAAAGGTATCAACCTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAGTGGCAGGGAAATGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGTAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTATGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTATTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACATTGTCTGTAGACAGGGAATATCCACCTCCCAAAAATTTGTGAACTTCAGCGGACCCAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGCGGAGCATTTCGTGTCAATCCATGGAATCTTGAAAGGACAGCGGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAATTGCGACATGAGAAGCATTATCGTTATGTTGCCACACACGACGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTAGGGCCGAAAGTCGGGCCATTCTGTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAATCACCGAGTGAGCAAGTTATCTCTATCCTTAACACCCTTTGTGCAGATGCAAAAAATGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGTTTGCTTCTATGATCTCTCTCATGTGTTTCTATCCTCTCCTTCTCGTTAATGGTGGGTACAGGCGTTTCATTGAGAATTATCGCACAGTAAATATAGCTAGTTGTATCCACTTTTATGGATTTCTGTATCATATTGTGAGAATTATCTAA 2076 41.38 MEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFKCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELAQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGNAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPIIERVAYYSIAECVAVTAVRDGMNLTPYEYIVCRQGISTSQKFVNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNLERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRFASMISLMCFYPLLLVNGGYRRFIENYRTVNIASCIHFYGFLYHIVRII 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25258732 25260807 - Lsi11G017160.1 Lsi11g01716 674883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01716 691 Pfam Glycosyltransferase family 20 41 524 IPR001830 GO:0003824|GO:0005992
Lsi11g01716 691 Gene3D Glycogen Phosphorylase B; 34 294 - -
Lsi11g01716 691 Gene3D - 570 651 IPR023214 -
Lsi11g01716 691 Pfam Trehalose-phosphatase 574 643 IPR003337 GO:0003824|GO:0005992
Lsi11g01716 691 CDD GT20_TPS 41 524 IPR001830 GO:0003824|GO:0005992
Lsi11g01716 691 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 2 644 IPR001830 GO:0003824|GO:0005992
Lsi11g01716 691 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 41 527 - -
Lsi11g01716 691 Gene3D Glycogen Phosphorylase B; 295 508 - -
Lsi11g01716 691 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 2 644 - -
Lsi11g01716 691 SUPERFAMILY HAD-like 571 652 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01716 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101209914 1281.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01179 Lsi-Chr7:17303864 Lsi11g01716 Lsi-Chr11:25258732 0 dispersed
Lsi11g01716 Lsi-Chr11:25258732 Lsi06g01540 Lsi-Chr6:25744451 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00174 . 45 468 Trehalose Biosynthesis Gene Families AT4G24040 57.2 1.2e-140 497.3
Lsi01g00224 . 1 846 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1348.6
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1152.1
Lsi11g01716 . 4 644 Trehalose Biosynthesis Gene Families AT1G06410 77.2 2.8e-310 1061.2
Lsi06g01540 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 1.7e-304 1042.0
Lsi11g01715 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 80.4 1.9e-77 287.7
Lsi04g00531 . 1 182 Trehalose Biosynthesis Gene Families AT1G06410 62.6 1.1e-61 235.3
Lsi04g01978 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.0e-248 856.3
Lsi02g00848 . 94 714 Trehalose Biosynthesis Gene Families AT1G16980 61.4 9.9e-231 796.6
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1215.7
Lsi07g01179 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1098.2
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT1G23870 61.3 1.3e-251 866.3
Lsi04g00531 . 3 188 Trehalose Biosynthesis Gene Families AT1G23870 73.0 2.2e-73 274.2
Lsi11g01715 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 59.9 8.5e-57 219.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1232.6
Lsi07g01179 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.8 0.0e+00 1079.7
Lsi01g00224 . 1 851 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1078.5
Lsi11g01716 . 6 642 Trehalose Biosynthesis Gene Families AT1G60140 60.1 2.6e-239 825.5
Lsi04g00531 . 3 194 Trehalose Biosynthesis Gene Families AT1G60140 69.8 7.6e-74 275.8
Lsi11g01715 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 3.7e-60 230.3
Lsi07g01179 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.7 0.0e+00 1270.4
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1161.4
Lsi06g01540 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1095.9
Lsi11g01716 . 6 647 Trehalose Biosynthesis Gene Families AT1G68020 63.1 2.1e-257 885.6
Lsi11g01715 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 65.2 1.0e-62 238.8
Lsi04g00531 . 8 180 Trehalose Biosynthesis Gene Families AT1G68020 66.5 1.0e-62 238.8
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.4 0.0e+00 1105.5
Lsi01g00224 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 57.1 7.3e-292 1000.0
Lsi07g01179 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 3.9e-285 977.6
Lsi11g01716 . 6 645 Trehalose Biosynthesis Gene Families AT1G70290 57.8 1.0e-221 766.9
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT1G70290 72.8 6.8e-72 269.2
Lsi11g01715 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 59.4 9.5e-58 222.2
Lsi04g01978 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 79.4 0.0e+00 1479.2
Lsi02g00848 . 8 950 Trehalose Biosynthesis Gene Families AT1G78580 71.0 0.0e+00 1322.4
Lsi06g01540 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.2 1.4e-301 1032.3
Lsi01g00224 . 1 843 Trehalose Biosynthesis Gene Families AT2G18700 58.9 1.0e-299 1026.2
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.4 9.3e-298 1019.6
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT2G18700 57.1 2.2e-230 795.8
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT2G18700 65.2 1.1e-61 235.3
Lsi11g01715 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.5 2.6e-53 207.6
Lsi07g01179 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.3 0.0e+00 1379.8
Lsi01g00224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 67.0 0.0e+00 1182.5
Lsi06g01540 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1107.0
Lsi11g01716 . 4 642 Trehalose Biosynthesis Gene Families AT4G17770 63.7 2.9e-259 891.7
Lsi11g01715 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 60.3 2.1e-63 241.1
Lsi04g00531 . 7 182 Trehalose Biosynthesis Gene Families AT4G17770 61.9 3.0e-62 237.3
Lsi04g01978 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.2e-304 1042.3
Lsi02g00848 . 98 944 Trehalose Biosynthesis Gene Families AT4G27550 57.4 1.4e-276 949.1
Lsi04g01978 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 79.4 0.0e+00 1479.2
Lsi02g00848 . 8 950 Trehalose Biosynthesis Gene Families AT1G78580 71.0 0.0e+00 1322.4
Lsi04g01978 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.0e-248 856.3
Lsi02g00848 . 94 714 Trehalose Biosynthesis Gene Families AT1G16980 61.4 9.9e-231 796.6
Lsi04g01978 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 1.0e-194 677.2
Lsi02g00848 . 99 629 Trehalose Biosynthesis Gene Families AT1G17000 57.9 2.7e-179 625.9
Lsi04g01978 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.2e-304 1042.3
Lsi02g00848 . 98 944 Trehalose Biosynthesis Gene Families AT4G27550 57.4 1.4e-276 949.1
Lsi07g01179 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.3 0.0e+00 1379.8
Lsi01g00224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 67.0 0.0e+00 1182.5
Lsi06g01540 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1107.0
Lsi11g01716 . 4 642 Trehalose Biosynthesis Gene Families AT4G17770 63.7 2.9e-259 891.7
Lsi11g01715 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 60.3 2.1e-63 241.1
Lsi04g00531 . 7 182 Trehalose Biosynthesis Gene Families AT4G17770 61.9 3.0e-62 237.3
Lsi07g01179 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.7 0.0e+00 1270.4
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1161.4
Lsi06g01540 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1095.9
Lsi11g01716 . 6 647 Trehalose Biosynthesis Gene Families AT1G68020 63.1 2.1e-257 885.6
Lsi11g01715 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 65.2 1.0e-62 238.8
Lsi04g00531 . 8 180 Trehalose Biosynthesis Gene Families AT1G68020 66.5 1.0e-62 238.8
Lsi01g00224 . 1 846 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1348.6
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1152.1
Lsi11g01716 . 4 644 Trehalose Biosynthesis Gene Families AT1G06410 77.2 2.8e-310 1061.2
Lsi06g01540 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 1.7e-304 1042.0
Lsi11g01715 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 80.4 1.9e-77 287.7
Lsi04g00531 . 1 182 Trehalose Biosynthesis Gene Families AT1G06410 62.6 1.1e-61 235.3
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.4 0.0e+00 1105.5
Lsi01g00224 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 57.1 7.3e-292 1000.0
Lsi07g01179 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 3.9e-285 977.6
Lsi11g01716 . 6 645 Trehalose Biosynthesis Gene Families AT1G70290 57.8 1.0e-221 766.9
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT1G70290 72.8 6.8e-72 269.2
Lsi11g01715 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 59.4 9.5e-58 222.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1215.7
Lsi07g01179 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1098.2
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT1G23870 61.3 1.3e-251 866.3
Lsi04g00531 . 3 188 Trehalose Biosynthesis Gene Families AT1G23870 73.0 2.2e-73 274.2
Lsi11g01715 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 59.9 8.5e-57 219.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1232.6
Lsi07g01179 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.8 0.0e+00 1079.7
Lsi01g00224 . 1 851 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1078.5
Lsi11g01716 . 6 642 Trehalose Biosynthesis Gene Families AT1G60140 60.1 2.6e-239 825.5
Lsi04g00531 . 3 194 Trehalose Biosynthesis Gene Families AT1G60140 69.8 7.6e-74 275.8
Lsi11g01715 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 3.7e-60 230.3
Lsi06g01540 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.2 1.4e-301 1032.3
Lsi01g00224 . 1 843 Trehalose Biosynthesis Gene Families AT2G18700 58.9 1.0e-299 1026.2
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.4 9.3e-298 1019.6
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT2G18700 57.1 2.2e-230 795.8
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT2G18700 65.2 1.1e-61 235.3
Lsi11g01715 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.5 2.6e-53 207.6
Lsi09g00174 . 45 468 Trehalose Biosynthesis Gene Families AT4G24040 57.2 1.2e-140 497.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01716 Lsi_Chr11 FPKM 2.160179 2.654832 0.63147 0.378062 5.491676 5.584904 6.784459 0.18228 0.0 0.078065