Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0046 ATGGGGAGGGCGGTGGTTTATCTTTTTCTAATCACCGCCTTCGCCTTCTTCTTCGTATTTTATCCGTCCAATTCCCCCGATCGGAACCATCAAGAACTAACTCGTCGCCTAGGTTACAAATTACGAGCCCCTACTTTTGATCCTCTTGTTGAAGAAATGGAAAGATACGCAGAGGAACATGGATCTGGCAGGGGACGAAACGCCATTAGTGGGCAAAGAACTACCACGGCCAATCAGGTTCCCGATGCTTACAAAGATTACTACGATGAAGGTAGATTGAAAATTTCGTTGAGGCTGCTCGTGTTGTTTCCTTTGCTGGACCACTCGCCAAAAGACGGTGTTATCAGTTACGAGGAGTTGAGCGATTGGATTATTGAACAAGCCGTGCAGAGATTGAATTACAGGACACGGAAAGAGTTGGACTTCCATGACAAGAATGGAGATGGCGCCATTTCATTCCGCGAATATCTGCCACAGTTTACAGAGGAAGATATTGCAAAGAGAGGAACGGCGCATGGAGAAGCTGGATGGTGGAAAAGGCAATTCACAAATGCTGATACAGACCCAAATGGATTACTAAATTTTGAAGAACTGAAAGAGCGCATGGACTATGACAGAGATGGAAAACTCAATTTTGATGAATTCCTCCACCATGTATTTGACATATACAAGAGCTACATTGAATTTGAAACTCAAGGGGATGATGTACCGACAGCCGAAGAGAAGTTTGATGAGCTTGATCTTGACGAGGATGAGTTACTGTCAGTGGAAGAGTTGAGGCCATTGTTCCAGTATCTTCATCCTGGAGAACTGTCTTATGCCCAACATTACACAAGTCATTTGATATATGAGGCTGATGATAACAAAGATGGCTACTTATCACTTGATGAGATGCTTAATCATGAGTATGTTTTCTACAACTCGGTATATGAAGGTCGCAATGGCGACTATGAAGACGATTACCATGATGAACTTTGA 978 43.35 MGRAVVYLFLITAFAFFFVFYPSNSPDRNHQELTRRLGYKLRAPTFDPLVEEMERYAEEHGSGRGRNAISGQRTTTANQVPDAYKDYYDEGRLKISLRLLVLFPLLDHSPKDGVISYEELSDWIIEQAVQRLNYRTRKELDFHDKNGDGAISFREYLPQFTEEDIAKRGTAHGEAGWWKRQFTNADTDPNGLLNFEELKERMDYDRDGKLNFDEFLHHVFDIYKSYIEFETQGDDVPTAEEKFDELDLDEDELLSVEELRPLFQYLHPGELSYAQHYTSHLIYEADDNKDGYLSLDEMLNHEYVFYNSVYEGRNGDYEDDYHDEL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 257062 261831 + MC10g0042 Mch10g0046 677139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0046 325 Pfam EF hand 144 156 IPR002048 GO:0005509(InterPro)
Mch10g0046 325 Pfam EF hand 201 215 IPR002048 GO:0005509(InterPro)
Mch10g0046 325 SUPERFAMILY EF-hand 174 315 IPR011992 -
Mch10g0046 325 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
Mch10g0046 325 ProSiteProfiles EF-hand calcium-binding domain profile. 234 269 IPR002048 GO:0005509(InterPro)
Mch10g0046 325 PANTHER RETICULOCALBIN 73 325 - GO:0005509(PANTHER)|GO:0005783(PANTHER)
Mch10g0046 325 Gene3D - 159 224 - -
Mch10g0046 325 Pfam EF-hand domain pair 279 297 IPR002048 GO:0005509(InterPro)
Mch10g0046 325 ProSitePatterns EF-hand calcium-binding domain. 286 298 IPR018247 -
Mch10g0046 325 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Mch10g0046 325 Gene3D - 225 303 - -
Mch10g0046 325 SUPERFAMILY EF-hand 100 200 IPR011992 -
Mch10g0046 325 Gene3D - 98 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0046 K23901 - - csv:101207354 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0046 Mch-Chr10:257062 Mch9g1669 Mch-Chr9:18732548 3.32E-36 dispersed
Mch10g0046 Mch-Chr10:257062 Mch4g1625 Mch-Chr4:19450203 2.19E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29