Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0048 ATGGAGAAGTCTAGATCTAAGAGAAACTACTACTATGACCACCAAGACTATGATTCGGAGGCGATGGGTAGAACCAGACCTCGTTACAACAATCACTACGCCAATAATAACTATCGTCACCGTGGAAGTGCAGCCCGGCCGTCTAAACCTCAAGACCAATCTCTTATGGTGACCACGACTTACAGGATTCTCTGTCACGACGCCAAGGCCGGGGGAGTTATCGGCAAATCCGGTAGCATCATTAAGTCCATTAGGCAGCACACCGGCGCGTGGATCAACGTGCATGAGCTAGCTCCGGGCGATGAGGAGAGAATAATTGAAATATCGGACACCCGGCGGCGGGACCCGGAAGGCCGGATTCCGCCGTTCTCTCCGGCGCAAGAAGCACTTTTCTTGATTCATGATAGGATTCTTGAGAGTGACATGAGTCCTGGGTTTAACGGAATGGGGTATGGTGCTGAGGACGAGGATGATGATTACGGTGGGGTTAGGGGAGGAGCTGGCGGTGGTGGTGGCGGTGGCCGTGTAGCAACAAGGCTTGTCGTGTCAAGAATGCACGTCGGTTGTTTGCTAGGGAAGGGAGGAAAGATAATCGAGCAAATGAGGATGGAAACCAAGACCCAGATAAGGATTCTACCTAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTTCAGATTGTTGGTGATGCAAATGCTGTGAAGAATGCTATAGCTATCGTTTCATCACGCTTGAGAGAGAGTCAGCATCGTGATCGTAGTCATTTACATGGACGTCTGCATTCACCGGAACGTGGTTTCCCTCCTGATGATGATTATGTTCCAAATATAAGCAATACAGGGCGACGGTTATCAATGGATGGACGAACATTTAGATCACGTGCTTCTAATGCAAGAGGCAATGACTATTCCAACCGTCAATCTAGTTTTTCAATAGAGCCTGGGGCCCCTCCTGTTAGTGACAATGTGATGCCCTTTTACGGGGAGGACCTTGTATTTAGAATATTATGCCCAATTGACAAAGTTGATAGTGTTATTGGAGAGTCTGAAGGAATTATAGAATTACTACGGAATGAAGTTGGTGTGGATATCAAGGTTTCCGACCCTGTAACTGGTTCAAACGAACGGATTCTTACCATTTCCTCGGAGGAGGGTCCAGACGATGAGCTCTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCACATTGTTGATCTCATTCCTGATAAGGATAACGTTGTAACTACTAGGTTGCTTGTCCCATCAAGTGATATTGTATGTTTGGAGGGAAGAGATGGATCATTGTTAGAGATGAAGAGATTAACTGGTGCAAATATACAAATTGTGCCAAGAGAAGAACTTCCTGTGTTTGTATCAGGGGCTGATGAACTCATACAGATCGTAGGGGACATAAAAGCAGCTAGAGATGCACTTGTTGAGTTAACATCAAGATTACGGAGTTACCTTTATAAGGAGCCCTTCCAAAAAGATACAAGTCCTCCAGTCAGTTTAGGACTTGAGGAATCATCTTCAAATAATAATGTTGCAGCTCGTGAAGTTCATAGCGGAATTGATCCTTCTAGCACAGCCTATCAAAATGTGCAACCTTTTGGAACAGCACAACTGCTAAAGGAAACTGGAGGATCGAGCAATGAAACTAGTAAGCAGAATGAAAATGACCGACGGGAAGATCTGCCTAGTGGGTTAAATAGGATACCTGTGCCGCTTGTTACTCGTAGTACACTTGAAGTTGTGATACCAGAGCCTGCCGTTCCGAAGCTTATAACAAAATCAAAAAACAAGCTTGCCCAGATCAGTGAGTTGTCTGGAGCCAATGTTACGCTGGTAGAAGACAGACCAGATGTAACACAGAAGATAATTCAAATATCAGGTACACCAGAGCAGGCTGAGAGAGCCCAGAGCTTGTTGCAAGGCTTTATTTTGAGCATGCAAGAAGACGGCCCCTAA 1983 45.69 MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYANNNYRHRGSAARPSKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELAPGDEERIIEISDTRRRDPEGRIPPFSPAQEALFLIHDRILESDMSPGFNGMGYGAEDEDDDYGGVRGGAGGGGGGGRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDANAVKNAIAIVSSRLRESQHRDRSHLHGRLHSPERGFPPDDDYVPNISNTGRRLSMDGRTFRSRASNARGNDYSNRQSSFSIEPGAPPVSDNVMPFYGEDLVFRILCPIDKVDSVIGESEGIIELLRNEVGVDIKVSDPVTGSNERILTISSEEGPDDELFPAQEALLHIQTHIVDLIPDKDNVVTTRLLVPSSDIVCLEGRDGSLLEMKRLTGANIQIVPREELPVFVSGADELIQIVGDIKAARDALVELTSRLRSYLYKEPFQKDTSPPVSLGLEESSSNNNVAAREVHSGIDPSSTAYQNVQPFGTAQLLKETGGSSNETSKQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSMQEDGP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 262336 274990 - MC10g0043 Mch10g0048 677141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0048 660 Gene3D - 333 494 - -
Mch10g0048 660 MobiDBLite consensus disorder prediction 282 319 - -
Mch10g0048 660 ProSiteProfiles Type-1 KH domain profile. 334 401 - -
Mch10g0048 660 ProSiteProfiles Type-1 KH domain profile. 58 133 - -
Mch10g0048 660 CDD KH-I_PEPPER_rpt1_like 334 402 - -
Mch10g0048 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 412 499 IPR036612 GO:0003723(InterPro)
Mch10g0048 660 ProSiteProfiles Type-1 KH domain profile. 175 245 - -
Mch10g0048 660 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723(InterPro)
Mch10g0048 660 MobiDBLite consensus disorder prediction 253 272 - -
Mch10g0048 660 SMART kh_6 333 406 IPR004087 GO:0003676(InterPro)
Mch10g0048 660 SMART kh_6 57 138 IPR004087 GO:0003676(InterPro)
Mch10g0048 660 SMART kh_6 583 653 IPR004087 GO:0003676(InterPro)
Mch10g0048 660 SMART kh_6 174 250 IPR004087 GO:0003676(InterPro)
Mch10g0048 660 SMART kh_6 417 491 IPR004087 GO:0003676(InterPro)
Mch10g0048 660 CDD KH-I_PEPPER_rpt1_like 58 131 - -
Mch10g0048 660 ProSiteProfiles Type-1 KH domain profile. 584 648 - -
Mch10g0048 660 MobiDBLite consensus disorder prediction 549 576 - -
Mch10g0048 660 Gene3D K Homology domain, type 1 583 654 IPR036612 GO:0003723(InterPro)
Mch10g0048 660 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 277 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Mch10g0048 660 CDD KH-I_PEPPER_rpt2_like 178 250 - -
Mch10g0048 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 52 110 IPR036612 GO:0003723(InterPro)
Mch10g0048 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 173 256 IPR036612 GO:0003723(InterPro)
Mch10g0048 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 327 391 IPR036612 GO:0003723(InterPro)
Mch10g0048 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 576 656 IPR036612 GO:0003723(InterPro)
Mch10g0048 660 MobiDBLite consensus disorder prediction 253 320 - -
Mch10g0048 660 Pfam KH domain 337 387 IPR004088 GO:0003723(InterPro)
Mch10g0048 660 Pfam KH domain 179 245 IPR004088 GO:0003723(InterPro)
Mch10g0048 660 Pfam KH domain 60 109 IPR004088 GO:0003723(InterPro)
Mch10g0048 660 Pfam KH domain 420 485 IPR004088 GO:0003723(InterPro)
Mch10g0048 660 Pfam KH domain 586 649 IPR004088 GO:0003723(InterPro)
Mch10g0048 660 Gene3D K Homology domain, type 1 173 254 IPR036612 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0048 K21444 - - csv:101217605 1107.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0048 Mch-Chr10:262336 Mch4g0874 Mch-Chr4:6340536 9.22E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37