Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0061 ATGGATTTGGATAGTATCGAGTGTGTATCATCGTCAGATGGTCTCGATGAGGATGAGATCCATCTTCACAACACTCTCCATCCTTATTCCCATTCTCATCATCATTCAGAGTTGCCAGCATCGAAGCCTCGTAATGGAAACAACAATAGCGCTATAACAGGCCCCACTGCGACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCCGTCTGCACTAATTCTATGTATCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGCAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTAGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCGCTTGAATTACCTTGCAAGTATTATCCCTTGGGGTGCCCGGAGATATTTCCATACTACAGTAAACTCAAGCATGAGGCTTGGTGCAACTTCAGACCTTACAATTGCCCGTATGCTGGGTCAGAATGCTCTGCTGTTGGGGATATTCCTTTTCTCGTTGCCCACCTGAGGGATGATCATAAGGTGGATATGCACACTGGATGTACATTTAACCATCGCTATGTGAAATCGAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCGTTTCAGCTTGGTGTGGCCCCAGTCTACATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACATACAGTTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTAATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCATGATGGATTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGGGTCTGCATACCAAACCTTTGTACCTAA 996 45.88 MDLDSIECVSSSDGLDEDEIHLHNTLHPYSHSHHHSELPASKPRNGNNNSAITGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYPLGCPEIFPYYSKLKHEAWCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGVAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 326444 332618 + MC10g0056 Mch10g0061 677154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0061 331 CDD RING-HC_SIAHs 68 106 - -
Mch10g0061 331 CDD Sina 184 312 - -
Mch10g0061 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515(InterPro)
Mch10g0061 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270(InterPro)
Mch10g0061 331 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Mch10g0061 331 Pfam Sina, TRAF-like domain 214 311 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Mch10g0061 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Mch10g0061 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Mch10g0061 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Mch10g0061 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 121 - -
Mch10g0061 331 SUPERFAMILY TRAF domain-like 123 315 - -
Mch10g0061 331 MobiDBLite consensus disorder prediction 41 57 - -
Mch10g0061 331 MobiDBLite consensus disorder prediction 27 57 - -
Mch10g0061 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 313 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Mch10g0061 331 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 70 105 IPR049548 -
Mch10g0061 331 SUPERFAMILY RING/U-box 58 112 - -
Mch10g0061 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 122 IPR013083 -
Mch10g0061 331 Pfam Sina, zinc finger 119 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0061 Mch-Chr10:326444 Mch9g1742 Mch-Chr9:19389569 2.19E-171 dispersed
Mch10g0060 Mch-Chr10:323386 Mch10g0061 Mch-Chr10:326444 2.50E-254 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0061 K04506 - csv:101215696 676.396