Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0067 ATGATAATCAAACGCAATCTGAAATCCCAAATGCCGAATCTGAAACGGTGCAAACTCGGCGACTCGGCTGGTGAAGACGACGAGAGCTCCGCGGCGAGGAAGAAGAGAAAGCTCAACGGTTATTACCCACTTAATCTTCTCGGCGAGGTTGCGGCTGGAATAATCCCTTTCAAGCTTCACGACATTCTGGGCACCACCAACAAGGGGATTGCAGCCTCATGGTGTACCCACATATCGTGCTCCCCCGTGGAAATGGAGTCGAAGTCGAATAGCCGAGAATCATTGGCAAGAGCGACGCCAACCAAACCGGCGGCAGAGGTCCCGCGACCGCCCCTTGTGAGGACGTCGAGAGGACGGGTCCAGGTACTTCCTTCTCGGTTTAACGATTCCGTTATTGAGAATTGGAGAAAAGACAGCAAGATTAGCTTGCGTGATTACAGCTTCGATGAAGAATTCAAATGTAAAAAGGAGAAATTCAGTTTCAAGACTCCTCGAATTTGTAACGGGACTACCAAGAAAGTACACAACGGGGAAAAATTTGGTTTCAAGTTTGTCAAGTGTCCGGCATTGTGCGAGGAAGAGGAAGATGAAGCGGCAGGTGCGGAGTTCAAGAATTTCGATTTCAGGAAGTATTCTAGCTCTCGCAGTTCGTTAACTTCCGTACATGAGACTGTTGTTGAAGACGAGAAGTTCCCGGTTGATGTGGGTGGTGAAGATGGGAGTCCAAAGGAAACTAAACCGAAGGATGGCTTGTATGGACCTGAAGACTTCTACTCTGGTGATATTGTATGGGCGAAGGCAGGGAGGAAGGAGCCTTTTTGGCCCGCCATTGTCATTGATCCTATAACGCAGGCGCCTGAACTAGTTTTAAGAGCTTGTGTTGCAGATGCAGCTTGTGTTATGTTCTTCGGATATTCAGGGAACGAAAATCAAAGGGATTATGCATGGGTGAGGCGGGGGATGATTTTTCCATTTATGGATTTTATAGACAGGTTTCAAGGACAGTCAGAATTGGATAGATGCAAACCCAATGAGTTCCAGATCGCAATGGACGAAGCTTTCTTGGCAGAACGTGGGTTTACAGAAAAATTGATAGCAGATATTAATATGGCAGCTGGAAATACGATTGCTGATGAATTTCTTCTTAGAGGGACTCAGGAAGCTACTGGTTCTAACCAGGATCCTGACTGCCATTCTCCTCCTAAGCGAACTAGTTGCATTAAGGAAATGTATGCGAAAAAGAAAGACGGCTGTTGTGAGGGCTGTGGCCAAACACTTCCTGTTAAATTGGCGAAGAAAATGAAGGCTTCACCTCCTGGAAGTCAATTTTTATGTAAATCATGCACAAGGTTGACAAATTCAAAACATTATTGTGGCATATGCAAAAAGATTTGGAATCATTCAGATAGTGGTAGTTGGGTTCGTTGTGATGGTTGTAAAGTATGGGTGCATGCAGAGTGTGACAAAATTTCAAGCAACCTGTTCAAGGATCTTGGAAGTACTGATTATTTCTGCCCTACATGCAAAGCAAAATTTGATTTTGAACTATCAGATTCAGAAAAGTCACGACCCAAAGTCAAAGGGAAGACAAATAATGATCGATTTATTTGTTCTGACAAAGTTACTGTACTCTGCAATGGTGTGGAAGGCATTTATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTCTTGTGGGACTGAAAAACAAGCACTTAGTGAGTGGGAACGGCATACTGGATCTAAGTCAAGAAATTGGAAGACCAGTGTGAGGGTAAAAGGTTCCATGCTGTCCCTAGAACAATGGATGCTGCAATTAGCCGAGTACCATGAAAGTGTAGTTTCTGTCAAGCATCCTAAACGGCCTTCCATGAAAGAACGAAGGCAAAAGTTGCTCGCTTTTTTGCAGGAGAAATATGAACCTGTTTATGCAAAGTGGACAACTGAGCGATGTGCAGTCTGTAGATGGGTTGAAGATTGGGACTACAATAAAATTATAATCTGCAACAGATGTCAGATAGCAGTTCATCAAGAATGCTATGGAGCTAGAAATGTTCGGGATTTCACATCGTGGGTCTGTAAAGTGTGTGAAACTCCTGATGTTAAGCGGGAGTGTTGCCTCTGTCCAGTAAAAGGGGGTGCCTTGAAGCCCACTGATGTCGACACGTTATGGGTCCATGTTACCTGTGCTTGGTTTAGGCCCGAAGTATCTTTCGCAAGTGATGAGAAAATGGAACCTGCTCTTGGTATCTTGAGTATCCCATCAAATTCTTTTGTAAAGATTTGTGTGATCTGTAAGCAAATTCATGGTTCATGCATGCAATGCTGCAAGTGCTCTACTTACTACCATGCTATGTGTGCATCAAGAGCAGGCTATTGCATGGAGTTGCACTGCCTGGAGAAGAATGGTAGACAAATCACAAAAATGGTTTCTTATTGTGCTTATCATAGGGCTCCCAATCCGGATACTGTTCTTATCATACAGACTCCTCTTGGGGTCTTTTCTACTAAAAGCCTTCTTCAGAATAAGAAGAGAGCTGGTTCAAGGTTAATCTCATCTAACAAAAAGGAAGTAGAAGAAGTATCTGAAACTTCTGAACTTGAGCCATTTTCTGCTGCGAGGTGTCAGGTTTATAAAAGATCAACTAGTGTGAAGAAGAGGACGGTTGAGGGAGCCGTTATTCACAAAGTGATGGGGCCATGCCATCATCCTTTACAAGCATTACAAAGTCTTAATACATTCAGCATAAAGATGGTAGAGGAACCAAAGGTCTTTTCCTCATTTCGGGATCGATTGTACCACTTACAGAGAACGGAGAATGATCGGGTATGCTTTGGTAGATCTGGTATACATGGATGGGGGCTTTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTTAGGCGCACCATTGCTGATCTAAGGGAGGCGCGGTACAGATCGGAGGGCAAAGACTGCTATCTTTTTAAGATCAGCGAAGAAGTAGTTGTCGATGCCACTGAGAAAGGAAATATAGCGCGCCTGATCAACCATTCATGTATGCCCAACTGTTACGCAAGGATCATGAGTGTTGGTGACGACGAAAGTCGGATTGTACTCATTGCCAAGGCGAATGTCCCTGCTGGCGAAGAGCTAACGTACGATTATTTGTTCGATCCCGACGAACCGGATGAATTCAAAGTCCCGTGTTTATGTAAAGCGCCAAACTGTCGGAAGTTCATGAATTAG 3255 44.15 MIIKRNLKSQMPNLKRCKLGDSAGEDDESSAARKKRKLNGYYPLNLLGEVAAGIIPFKLHDILGTTNKGIAASWCTHISCSPVEMESKSNSRESLARATPTKPAAEVPRPPLVRTSRGRVQVLPSRFNDSVIENWRKDSKISLRDYSFDEEFKCKKEKFSFKTPRICNGTTKKVHNGEKFGFKFVKCPALCEEEEDEAAGAEFKNFDFRKYSSSRSSLTSVHETVVEDEKFPVDVGGEDGSPKETKPKDGLYGPEDFYSGDIVWAKAGRKEPFWPAIVIDPITQAPELVLRACVADAACVMFFGYSGNENQRDYAWVRRGMIFPFMDFIDRFQGQSELDRCKPNEFQIAMDEAFLAERGFTEKLIADINMAAGNTIADEFLLRGTQEATGSNQDPDCHSPPKRTSCIKEMYAKKKDGCCEGCGQTLPVKLAKKMKASPPGSQFLCKSCTRLTNSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKDLGSTDYFCPTCKAKFDFELSDSEKSRPKVKGKTNNDRFICSDKVTVLCNGVEGIYFPSLHLVVCKCGSCGTEKQALSEWERHTGSKSRNWKTSVRVKGSMLSLEQWMLQLAEYHESVVSVKHPKRPSMKERRQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKVCETPDVKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCMQCCKCSTYYHAMCASRAGYCMELHCLEKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSTKSLLQNKKRAGSRLISSNKKEVEEVSETSELEPFSAARCQVYKRSTSVKKRTVEGAVIHKVMGPCHHPLQALQSLNTFSIKMVEEPKVFSSFRDRLYHLQRTENDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRTIADLREARYRSEGKDCYLFKISEEVVVDATEKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKANVPAGEELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 368513 377332 + MC10g0061 Mch10g0067 677160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0067 1084 Pfam SET domain 953 1058 IPR001214 GO:0005515(InterPro)
Mch10g0067 1084 SUPERFAMILY FYVE/PHD zinc finger 453 512 IPR011011 -
Mch10g0067 1084 SUPERFAMILY SET domain 935 1081 IPR046341 -
Mch10g0067 1084 ProSiteProfiles Post-SET domain profile. 1068 1084 IPR003616 -
Mch10g0067 1084 Pfam PHD-finger 664 698 IPR019787 -
Mch10g0067 1084 ProSiteProfiles SET domain profile. 942 1059 IPR001214 GO:0005515(InterPro)
Mch10g0067 1084 FunFam Histone-lysine N-methyltransferase 701 820 - -
Mch10g0067 1084 ProSiteProfiles PWWP domain profile. 259 328 IPR000313 -
Mch10g0067 1084 ProSiteProfiles Zinc finger PHD-type profile. 649 700 IPR019787 -
Mch10g0067 1084 Pfam PHD-finger 458 508 IPR019787 -
Mch10g0067 1084 ProSiteProfiles Zinc finger PHD-type profile. 455 511 IPR019787 -
Mch10g0067 1084 CDD PHD_ATX3_4_5_like 651 697 IPR042011 -
Mch10g0067 1084 ProSiteProfiles Extended PHD (ePHD) domain profile. 703 818 IPR034732 -
Mch10g0067 1084 SMART set_7 942 1065 IPR001214 GO:0005515(InterPro)
Mch10g0067 1084 SUPERFAMILY Tudor/PWWP/MBT 252 358 - -
Mch10g0067 1084 SUPERFAMILY FYVE/PHD zinc finger 650 714 IPR011011 -
Mch10g0067 1084 Gene3D SET domain 846 1084 IPR046341 -
Mch10g0067 1084 SMART PostSET_3 1068 1084 IPR003616 -
Mch10g0067 1084 FunFam Histone-lysine N-methyltransferase 916 1084 - -
Mch10g0067 1084 ProSitePatterns Zinc finger PHD-type signature. 652 697 IPR019786 -
Mch10g0067 1084 SMART PHD_3 457 509 IPR001965 -
Mch10g0067 1084 SMART PHD_3 651 698 IPR001965 -
Mch10g0067 1084 SMART PHD_3 762 818 IPR001965 -
Mch10g0067 1084 CDD ePHD_ATX3_4_5_like 706 817 IPR041955 -
Mch10g0067 1084 PANTHER PHD FINGER PROTEINS 104 1084 IPR050701 GO:0006357(PANTHER)
Mch10g0067 1084 CDD PWWP_AtATX3-like 258 362 - -
Mch10g0067 1084 Gene3D - 254 360 - -
Mch10g0067 1084 Pfam PWWP domain 260 354 IPR000313 -
Mch10g0067 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 700 IPR013083 -
Mch10g0067 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 820 IPR013083 -
Mch10g0067 1084 MobiDBLite consensus disorder prediction 89 110 - -
Mch10g0067 1084 CDD PHD_TCF19_like 458 508 - -
Mch10g0067 1084 Pfam PHD-zinc-finger like domain 705 817 - -
Mch10g0067 1084 FunFam Histone-lysine N-methyltransferase 639 700 - -
Mch10g0067 1084 CDD SET_SETD1-like 929 1080 - -
Mch10g0067 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 512 IPR013083 -
Mch10g0067 1084 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1084 IPR025780 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0067 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0067 Mch-Chr10:368513 Mch7g0211 Mch-Chr7:2573096 2.87E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007355 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42407 PF13832 zf-HC5HC2H_2 8.00E-27 CL0390 Mch TR