Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0069 ATGTCGTCTACTCTGCTAGAGGTGACGCGCGCCTCGCACGAGGAGGTGGAGCGACTTGAGCGTCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAACATGATTGACACAATCATGTCCACCACCGAGAAACTCGTTGAGATTTATGAAGATAAGGATAGTGCCAGGAAAGATGAGATTGCAGCACTCGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTAGATGTTAATGAGGATGATGGTCTTCTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGATTTGCACGAACTGTACAACCAATATATTAATTCTAAATTTGGAGAGCCCATTGAGTACTCTTCTTACCTGGATGTTTTTTCACAACCCCAGAAAATCCCTCGCAAACTAAAGATTTCAAGACAATACAGGGAATACATGGAGAATCTACTTGCTTACCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATAGAATATTCTCAAAGGGTGAATCTGAATTTGAAGAGCGATGGGTTACTGGCACAATTGAAGGATGGGAGAACACTAGTAAAGATGATGGCCATGATACTGACCCGCTTAATCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTGGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTACAATTGTTGGACAAAAAACACTTTGCGAAAGTGTCTCGTGAACCGATTCAGAATGGGGCAGCTGCAACTTCACTACACGATGAAAATTTGAAACAAGTTGCCCTGATGGAAGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACGATTGCTCGAACCAAAGACAATATTGTTAAGAAGCAAGCATTAACTTATGAGGAAATTGAAGCAGAGCGTGAGGAGGAAGAGACACAAGCTGAATCTGAAAGTGACGATGAAGAGCAACAGATTTATAATCCCCTCAAGCTCCCAATGGGTTGGGATGGTAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGCGGAAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACGTCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAGCGACAAGGAGTTAACAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAAGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATATAA 1527 43.09 MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQYREYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDPLNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 382760 391677 - MC10g0063 Mch10g0069 677162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0069 508 Pfam Replication stress response SDE2 C-terminal 223 303 IPR025086 -
Mch10g0069 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 174 IPR031774 -
Mch10g0069 508 Coils Coil 352 379 - -
Mch10g0069 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro)
Mch10g0069 508 MobiDBLite consensus disorder prediction 362 381 - -
Mch10g0069 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Mch10g0069 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 481 IPR051421 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER)
Mch10g0069 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0069 K12827 - csv:101205916 931.784