Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0082 CTGGCATCTAGTTCTGAGAGAGTTAGAAGAGCTAAGAAACTAATGAAATCTTCTATATCTAATAACCTCACGCCTGAAGGCTTGCGCTCTGGGAGAAAAATGTTTGACCCACAGGAACATTTTCTTCAAACATGGAACAAGATGTTTGTGCTGTCTTGTGTGATTTCTGTTTCGCTGGATCCTCTGTTCTTTTATGTTCCTGTGATTGATAATAACAAGAACTGTCTAAGGTTGGATAGGAAATTGGAGACTCTGGCCTGTATCTTACGATTATTTACAGATGTATTCTATATTGTGCGTATTTTTTTTCAGTTTCGTACAGGATTTATTGCTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTAGTAGAAGATTCATGGGCAATAGCAAAGAGGTATCTGTCATCATACTTTCTAATTGACATTTCTTCAGTCCTCCCACTTCCACAGGTGGTGATTCTGATAATCATCCCTAAAATGGGAGGTTCGAGATCAATGAATGCAAAGGACTTGCTGAAGTTTGTTGTTTTATGTCAATATGTGCCAAGGTTTCTTCGAATCTATCCACTGTATAAAGAAGTTACAAGGACCTCGGGCCTATTCATTGAAAGTGCATGGGCGGGAGTTGCATTTAATCTCTTTCTATACATGCTAGCCAGCCATGTATTTGGGGCGTTATGGTACTTATTTTCTGTAGAACGGGAAACCCAATGCTGGCTTGAAGCTTGTAACAATCATAGTGGCTGTACCTCTACTTCCTTGTATTGTGATGACCGTTTTGAAGGGAACACATTCCTCAATGTTTCTTGCCCAATCAAACCGCCAAATGAGACACTTTATAACTTTGGAATATTCCTTCATGCCCTTCAATCTGGTATTGTGGAATCAATGGATTTTCCATCGAAGTTGTCTTACTGCTTTTGGTGGGGCTTAAGGAATTTAAGCTCTTGGGGTCAAAATCTTGCTACGACGAGCACTTACACATGGGAAAACTGCTTTGCAGTTTTAGTTTGCATCTCTGGCTTAGTGTTGTTTCCGTCACTCATAGGCAACATGCAGATGTATTGGCTATCCACAAACACAAGGGTGGAGGAGATGAGAGTGAGAAGGAGAGATGTAGAACAATGGATGTCACATTGCTTACTCCCTGAGAATCTAAGGAAGCGGGTTCGGAGGTATGAACATTACACTTGGCAAGAAACCAGAGGTGTTAATGAACATAATCTACTGCATAATCTTCCTAGAGACCTCCAACGAGACATTAAACGCCATCTTTGCTTGGCTTTGCTAATGCGAGTTCCAATGTTTGAAAAGATGGATGAACAATTGCTAGACGCGATTTGTGCCCGTCTAAAGCCAGTGCTGTACACAGAAGAAAGCAACATTGTTCGGGAAGGCGACCCAGTCACCGAGATGCTCTTCATCATGCGAGGCAAGCTATTATCCATGACAACAAATGGTGGGAGAACTGGTTTCTTCAACTCTGATTTTCTCATGGCTGGTGATTTCTGTGGGGAAGAGCTACTAACTTGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCCATTTCAACTCGAACCGTCCGAGCACTTACAGAAGTTGAAGCATTTGCTTTAAAACCCAAGGACTTGAAACTTGTAGCGTCTCAATACCGCAGGCTTCACAGCAAACATCTGCGCCATATTTTCAGATTCTACTCACAGCAATGGAGAACCTGGGCAGCTTGTTTTGTACAAGCAGCATGGCGACGCCATCGAAGAATGAAGCTCAGAGAGTCTATCCAGGAAGAAGAGAGTAGAGTGAAAGACACGTTGGCTAAGCTCGAGGGGCGGTCGCCGAGTTTAGACGCCACCATCTATGCATCTAGATTTGCTGCTAACATGCTGCTTCAGAAGCCAGCAGAGCCTGATTTTACCTTGGAAGTTAACACATAA 1935 42.89 LASSSERVRRAKKLMKSSISNNLTPEGLRSGRKMFDPQEHFLQTWNKMFVLSCVISVSLDPLFFYVPVIDNNKNCLRLDRKLETLACILRLFTDVFYIVRIFFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLSSYFLIDISSVLPLPQVVILIIIPKMGGSRSMNAKDLLKFVVLCQYVPRFLRIYPLYKEVTRTSGLFIESAWAGVAFNLFLYMLASHVFGALWYLFSVERETQCWLEACNNHSGCTSTSLYCDDRFEGNTFLNVSCPIKPPNETLYNFGIFLHALQSGIVESMDFPSKLSYCFWWGLRNLSSWGQNLATTSTYTWENCFAVLVCISGLVLFPSLIGNMQMYWLSTNTRVEEMRVRRRDVEQWMSHCLLPENLRKRVRRYEHYTWQETRGVNEHNLLHNLPRDLQRDIKRHLCLALLMRVPMFEKMDEQLLDAICARLKPVLYTEESNIVREGDPVTEMLFIMRGKLLSMTTNGGRTGFFNSDFLMAGDFCGEELLTWALDPHSSTNLPISTRTVRALTEVEAFALKPKDLKLVASQYRRLHSKHLRHIFRFYSQQWRTWAACFVQAAWRRHRRMKLRESIQEEESRVKDTLAKLEGRSPSLDATIYASRFAANMLLQKPAEPDFTLEVNT 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 462197 467653 - MC10g0073 Mch10g0082 677175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0082 644 Pfam Ion transport protein 44 354 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0082 644 Gene3D - 48 356 - -
Mch10g0082 644 CDD CAP_ED 435 566 IPR000595 -
Mch10g0082 644 Gene3D Jelly Rolls 433 553 IPR014710 -
Mch10g0082 644 Coils Coil 587 611 - -
Mch10g0082 644 FunFam Cyclic nucleotide-gated ion channel 1 433 551 - -
Mch10g0082 644 ProSiteProfiles cAMP/cGMP binding motif profile. 435 519 IPR000595 -
Mch10g0082 644 SUPERFAMILY cAMP-binding domain-like 364 561 IPR018490 -
Mch10g0082 644 SUPERFAMILY Voltage-gated potassium channels 36 356 - -
Mch10g0082 644 Pfam Cyclic nucleotide-binding domain 456 547 IPR000595 -
Mch10g0082 644 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 21 631 - -
Mch10g0082 644 Gene3D Helix hairpin bin 358 426 - -
Mch10g0082 644 FunFam Cyclic nucleotide-gated ion channel 1 362 426 - -
Mch10g0082 644 SMART cnmp_10 435 566 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0082 Mch-Chr10:462197 Mch6g1858 Mch-Chr6:21088339 0 dispersed
Mch10g0080 Mch-Chr10:449699 Mch10g0082 Mch-Chr10:462197 1.45E-139 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0082 K05391 - csv:101214911 944.11