Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0083 ATGGTATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACATATAGGAATAATCAACAGACGGGTCCAAATCAAATATTTGTGGAGGAGCTTACCTGCCAATCTTGGATTTGCTCACACCTGGAAGCGTGAATTTAGAACAAGTCTCATGATGATGGTCGATACGGGTGCATCGGAAAATCGCGGGCTGATTGTTGATCAGCATCCAGAGAAAGATGAAGATGGTGGCTATGCCAGTGGAGGGTGGAAAAGCGATGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGAAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCAAAGGTCGATGGTCAAACAGTCTGCCTTTTTGGCATTTTTGATGGTCACGGTGGATCCCGTGCTGCAGAGTTTCTGAAGGACCATCTCTTTGAGAATCTCATGAAGCATCCAAAATTTTTGATGGATACCAAATTAGCAATCAGTGAAACTTATCAACAGACCGATGCTGAATTTTTGAATTCAGAAAAAGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTAGTTGGTAATCACCTCTATGTTGCAAATGTTGGAGATTCACGTGCTATAATATCAAAGGGTGGTGAAGCTATCCCCCTTTCTGAGGACCATAAGCCGAACAGAACTGACGAGCGAAGGAGAATTGAAAACGCCGGGGGTGTTGTCATGTGGGCTGGTACTTGGAGGGTAGGAGGAGTTTTAGCAATGTCCCGTGCTTTTGGTAACAAGATGTTGAAGCAGTTTGTCGTGGCAGATCCCGAGATTCAGGATCTCGAAGTTGACAAAGACATTGAGTTGCTCGTTCTCGCAAGCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCTGGGAAGGAGGAAGAACCCGAGGCAGCTGCTCGGAAGCTAACCGAAGCAGCATTTACCCGTGGTAGCGCTGACAACATAACGTGCATTGTGGTGAAGTTCCATCACGGCAATGCAGGTCCCGCTGCCGATACTCGAGATGCGGACTAA 1062 46.05 MVCSYNIRNVIAQAGHIGIINRRVQIKYLWRSLPANLGFAHTWKREFRTSLMMMVDTGASENRGLIVDQHPEKDEDGGYASGGWKSDDGKLSWGYSSFRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPEIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHGNAGPAADTRDAD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 469414 473674 + MC10g0074 Mch10g0083 677176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0083 353 SMART PP2C_4 82 336 IPR001932 -
Mch10g0083 353 FunFam Probable protein phosphatase 2C 76 84 344 - -
Mch10g0083 353 SUPERFAMILY PP2C-like 90 339 IPR036457 -
Mch10g0083 353 PANTHER PROTEIN PHOSPHATASE 76 337 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch10g0083 353 CDD PP2Cc 94 338 IPR001932 -
Mch10g0083 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
Mch10g0083 353 SMART PP2C_SIG_2 90 338 IPR001932 -
Mch10g0083 353 Gene3D - 84 342 IPR036457 -
Mch10g0083 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Mch10g0083 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0083 Mch-Chr10:469414 Mch11g0475 Mch-Chr11:3037149 6.24E-119 dispersed
Mch10g0077 Mch-Chr10:433518 Mch10g0083 Mch-Chr10:469414 5.78E-39 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0083 K17506 - csv:101203681 673.7