Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0084 ATTTTTTTCCCTTTTGCTTTCGGGCTGCCCACCGGCCGCCCAGTTTCGTGGAGATCCGCAATGGGACTGCCCAACCTCCTTTCCGATGACCGCAACTCCACTGAATTAGAAACTTACACTTCATGGCTGAGAAAACACCCTTGTGGTTTGGAATCGTTTGAGAAGATGATGAAGGGAGCCAAAGGGAAGAAAATTGTTTTGTTTTTGGATTATGATGGAACCCTCTCTCCCATTGTTGATGATCCTGATCGTGCTTTCATGTCTCCTGAGATGAGAGCAGGTGTGAGAGAAGTGGCAAACTGCTTTCCAACAGCAATAATAAGCGGAAGGAGCCGTGACAAAGTGAAAGAATTCGTGAAGTTGAATAACGTGTATTATGCTGGGAGCCACGGAATGGACATTATGGCTCCAACATCCGACAATGAGGTGGAGGAGGTTGCGTATCAACCCGCCAAAAAGTTCCTGCCTGCAGTTCAACAGATAAAGGCCGTGTTGGAAGAAGAAATTACAGAAATAGAAGGTGCAGTGGTGGAGGATAATAGATTCTGTGTTTCTGTGCATTATCGACACGTCCGCGAACAGGACCTGGAGAAGTTGGAGGAGAAGGTAGAGTCTGTACTGGAAAACTATCCAGATTTCCATGTAACGCAGGGCAAAAAGGTTATAGAAATAAGACCGACAATAAACTGGAACAAAGGGCATGCGGTGGAATATTATCTTCATATTCTTGGACATACTAATTCTAAGGATATAATTCCTGTGTATATTGGTGACGATCGAACCGATGAAGATGCATTCAAGGCAATACAAAGGAGAGGAGGAGAAGGGATTGGAATTCTTGTATCTTCCATTCCAAAGCAAACAAAAGCTTGCTACACTTTGAAGGATCCATCTCAAGTTTTAATTTTCTTGCAAAGCTTAGCAAGATGGAAGCGTGCTTCTTCAATCACAGACCCT 957 43.99 IFFPFAFGLPTGRPVSWRSAMGLPNLLSDDRNSTELETYTSWLRKHPCGLESFEKMMKGAKGKKIVLFLDYDGTLSPIVDDPDRAFMSPEMRAGVREVANCFPTAIISGRSRDKVKEFVKLNNVYYAGSHGMDIMAPTSDNEVEEVAYQPAKKFLPAVQQIKAVLEEEITEIEGAVVEDNRFCVSVHYRHVREQDLEKLEEKVESVLENYPDFHVTQGKKVIEIRPTINWNKGHAVEYYLHILGHTNSKDIIPVYIGDDRTDEDAFKAIQRRGGEGIGILVSSIPKQTKACYTLKDPSQVLIFLQSLARWKRASSITDP 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 478060 480377 + MC10g0075 Mch10g0084 677177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0084 319 FunFam Trehalose 6-phosphate phosphatase 157 317 - -
Mch10g0084 319 NCBIfam HAD-IIB family hydrolase 67 272 IPR006379 -
Mch10g0084 319 CDD HAD_TPP 66 300 - -
Mch10g0084 319 Coils Coil 189 209 - -
Mch10g0084 319 FunFam - 65 117 - -
Mch10g0084 319 Gene3D - 67 294 IPR023214 -
Mch10g0084 319 FunFam Trehalose 6-phosphate phosphatase 151 227 - -
Mch10g0084 319 SUPERFAMILY HAD-like 66 310 IPR036412 -
Mch10g0084 319 Pfam Trehalose-phosphatase 68 298 IPR003337 GO:0005992(InterPro)
Mch10g0084 319 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 315 IPR044651 GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(InterPro)|GO:0005992(PANTHER)
Mch10g0084 319 Gene3D - 151 227 - -
Mch10g0084 319 NCBIfam trehalose-phosphatase 62 308 IPR003337 GO:0005992(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0084 K01087 - - csv:101204169 410.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0084 Mch-Chr10:478060 Mch8g0202 Mch-Chr8:1342291 1.75E-104 dispersed
Mch10g0084 Mch-Chr10:478060 Mch1g1429 Mch-Chr1:16049624 3.49E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32