Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0088 ATGGTTGATAGTTTGGCTGATTTTTTCCAACAAAATGAAGAATTTGTCGACAATCCCCATTTGGAAGGAGACGACCTCTTCAGCATCTTTGAGAGTTTGGAGAGTGTTGCAGAGTTCACCGTCATCGAGGACGACATCGAAGCTTTCAAAGACGGTGAAGAGACCACGAGCTTGGTCTTCTCCGAGACTGAGCTTGAGACTTCGCCTAAAAGCAAGCGCTTGAAGATGACGACCACGATGTCGTCCCCAATGGCAGCTCCTTCCGAAGAACCAAATCCAGATGGGCCTCAACGAATGTCTCACATTACGGTGGAGCGCAATCGTAGGAAGCAAATGAACGAGCACTTGTCCGTATTAAGGTCACTCATGCCGTGCTTCTATGTCAAGAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAAGAGTTGCAGCAAGTTCTTCAATCTCTAGAGGCCAAAAAGCAAAGGAAAGTTTATAGTGAAGTGTTGAGCCCTAGGGTAGTTTCAAGTCCAAGAGCTAATTTGGCAATGAGTCCAAGAAAACCACCACTGAGTCCACGCCTTAACTTGCCAATTAGTCCAAGAACTCCACAACCCACTAGCCCTTACAGCAAGCCTCCCCGGTTGCAGCAACCTCCCAGCACCGGCACCGCCGCCGCCGCCGCCGCCGCTGGTGGTGGTGGTTATAATATGGTCTCTTCTGCAGGCAGCTGCACCACCAACGTCAACAACAATAACTCATTAGAGTTGCCGTCGCCTTGTAACTCTTCCTCCACTACCACAAATTCCTCCATTGACATGAATGCCAATGATCTTGTGGCCAATTCTAAATCCGCCATAGCTGAAGTTGAGGTGAAGTTTACGGGTCCAAATGTGGTTTTGAAGACGGTTTCTCCTCCAATCCCTGGTCAGGCTGTGAAGATCATTTCTGCACTTGAACAACTCTCTCTTGAAATTCTCCATGTCAAGATCACCACCCTTGATGAAACCATGCTCAACTCTTTTACAATTAAG 1026 47.66 MVDSLADFFQQNEEFVDNPHLEGDDLFSIFESLESVAEFTVIEDDIEAFKDGEETTSLVFSETELETSPKSKRLKMTTTMSSPMAAPSEEPNPDGPQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVYSEVLSPRVVSSPRANLAMSPRKPPLSPRLNLPISPRTPQPTSPYSKPPRLQQPPSTGTAAAAAAAGGGGYNMVSSAGSCTTNVNNNNSLELPSPCNSSSTTTNSSIDMNANDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAVKIISALEQLSLEILHVKITTLDETMLNSFTIK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 504618 505922 - MC10g0079 Mch10g0088 677181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0088 342 MobiDBLite consensus disorder prediction 188 213 - -
Mch10g0088 342 Pfam Helix-loop-helix DNA-binding domain 97 148 IPR011598 GO:0046983(InterPro)
Mch10g0088 342 Gene3D - 90 161 IPR036638 GO:0046983(InterPro)
Mch10g0088 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 147 IPR011598 GO:0046983(InterPro)
Mch10g0088 342 MobiDBLite consensus disorder prediction 174 225 - -
Mch10g0088 342 CDD bHLH_AtFAMA_like 99 172 - -
Mch10g0088 342 SMART finulus 102 153 IPR011598 GO:0046983(InterPro)
Mch10g0088 342 MobiDBLite consensus disorder prediction 76 98 - -
Mch10g0088 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 169 IPR036638 GO:0046983(InterPro)
Mch10g0088 342 PANTHER TRANSCRIPTION FACTOR FAMA 7 342 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Mch10g0088 342 FunFam Transcription factor SPEECHLESS 88 162 - -
Mch10g0088 342 Coils Coil 140 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0088 K20558 - - csv:101211617 519.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0088 Mch-Chr10:504618 Mch5g0195 Mch-Chr5:1257813 5.90E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g866 . . Bda05g00110 . Bpe03g00175 . Bma10g01285 . . Cmo18g01328 . . . . Sed07g0811 . Cpe14g00057 Bhi01g01450 Tan01g0149 Cmetu06g1760 . . Mch10g0088 . . . . . . . . Cone1ag0958 Cone5ag0651 Cone14ag0031 . . . . . Blo07g00350 Blo09g00040 . Bda15g00775 . Bpe12g00372 . . . . . Cma16g00072 Cma18g01299 Car16g00063 Car18g01215 Cpe09g00043 . . . . . . . . . . . . . . . . Csa03g02197 Chy06g01256 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008152 1 1 1 1 1 1 2 1 1 1 0 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42409 PF00010 HLH 4.20E-12 No_clan Mch TF