Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0100 ATGGAGGATACTCTGTTTTGTCCAGTTAAGTTCACTGAGCACCGAAACTTCACCAAGAAATTTTCCACCAAGAAGCAGCAGCAGAATCAGCATCACCCGCCGGAAAATAGAGTTGTACGGATATCGGTAACTGACCCGGACGCGACGGATTCGTCCAGTGACGAAGAGGAGGGGGAGTTTTTTGAGCGGCAGAGAGTTAAGAAATACGTGAACGAGATCAAAATCGAAAGCGGGTCCAGAAATAGCCTTGTACCCGGTTGCCGGAAGCGGCCGGCCGGTGAGGGTTCCGAGTTCCGGCGCCCGGTGAAGCCGCCTCCGACAACCAATGGGAAGAAATTTCGCGGCGTGCGGCAGAGGCCTTGGGGGAAATGGGCGGCGGAGATTAGAGATCCTGCTCGCCGTCAGCGGGTGTGGCTGGGGACTTTCGACACGGCGGAGGAAGCCGCCATGGTTTACGACAACGCCGCCATTAAGCTCCGTGGGCCGGACGCCCTCACCAATTTCGCAACCCCGCCACCGCCGCCGGAGAAGGAAGCGGAGGTTAATATCCCCTCTGTTTCCGGGTCCTACTACGACTCCGGCGAGGAGTCTCACAATTTGTCATCCCCAACTTCGGTTCTCCACTTCAGAACTCAGTCGCCGGAAGAATCCGAAAACCCCCCAAAACCCGAAGCGTTTCAGAAACCGTCGCCGCCGTCGCTGGCCGACGACCAATTTCACGAATGTCAAGGCGAAACCTCTTTCTCCGGAGAATATTCCACCGATTTCCCCAAGTTCGAGGACATATTCCAACTTCCGAGCCCCGACATGTCGATTTTCTTCGACGAACAGCCGCTGTTCTTCGAGGAGAGCATTTGGAACGAAGGTTTCAGCCAGATTTTCACCAACATGCCGGAAGATTTGGGATCGCCGGTGCTATCTTCTTCGATTAGCCAAGGGGGCGACGATTATTTCCAAGATATTTTATTGGGGTCCGACCCTTTGGTGGTTCTC 993 54.98 MEDTLFCPVKFTEHRNFTKKFSTKKQQQNQHHPPENRVVRISVTDPDATDSSSDEEEGEFFERQRVKKYVNEIKIESGSRNSLVPGCRKRPAGEGSEFRRPVKPPPTTNGKKFRGVRQRPWGKWAAEIRDPARRQRVWLGTFDTAEEAAMVYDNAAIKLRGPDALTNFATPPPPPEKEAEVNIPSVSGSYYDSGEESHNLSSPTSVLHFRTQSPEESENPPKPEAFQKPSPPSLADDQFHECQGETSFSGEYSTDFPKFEDIFQLPSPDMSIFFDEQPLFFEESIWNEGFSQIFTNMPEDLGSPVLSSSISQGGDDYFQDILLGSDPLVVL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 569022 570014 - MC10g0089 Mch10g0100 677193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0100 331 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0100 331 SMART rav1_2 112 175 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0100 331 MobiDBLite consensus disorder prediction 186 218 - -
Mch10g0100 331 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 225 IPR050913 -
Mch10g0100 331 MobiDBLite consensus disorder prediction 166 237 - -
Mch10g0100 331 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Mch10g0100 331 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0100 331 CDD AP2 111 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0100 331 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0100 331 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0100 331 MobiDBLite consensus disorder prediction 80 118 - -
Mch10g0100 331 Pfam AP2 domain 112 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0100 331 MobiDBLite consensus disorder prediction 18 60 - -
Mch10g0100 331 SUPERFAMILY DNA-binding domain 112 169 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0100 Mch-Chr10:569022 Mch6g1933 Mch-Chr6:21837836 7.60E-64 dispersed
Mch4g1298 Mch-Chr4:15954628 Mch10g0100 Mch-Chr10:569022 1.52E-17 dispersed
Mch7g0231 Mch-Chr7:2846431 Mch10g0100 Mch-Chr10:569022 3.55E-40 transposed
Mch10g0100 Mch-Chr10:569022 Mch10g0865 Mch-Chr10:6087117 1.10E-52 wgd
Mch10g0100 Mch-Chr10:569022 Mch5g0450 Mch-Chr5:3040136 4.57E-43 wgd
Mch10g0100 Mch-Chr10:569022 Mch6g1869 Mch-Chr6:21223966 1.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42410 PF00847 AP2 3.40E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0100 - - - 0.0