Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0100 | ATGGAGGATACTCTGTTTTGTCCAGTTAAGTTCACTGAGCACCGAAACTTCACCAAGAAATTTTCCACCAAGAAGCAGCAGCAGAATCAGCATCACCCGCCGGAAAATAGAGTTGTACGGATATCGGTAACTGACCCGGACGCGACGGATTCGTCCAGTGACGAAGAGGAGGGGGAGTTTTTTGAGCGGCAGAGAGTTAAGAAATACGTGAACGAGATCAAAATCGAAAGCGGGTCCAGAAATAGCCTTGTACCCGGTTGCCGGAAGCGGCCGGCCGGTGAGGGTTCCGAGTTCCGGCGCCCGGTGAAGCCGCCTCCGACAACCAATGGGAAGAAATTTCGCGGCGTGCGGCAGAGGCCTTGGGGGAAATGGGCGGCGGAGATTAGAGATCCTGCTCGCCGTCAGCGGGTGTGGCTGGGGACTTTCGACACGGCGGAGGAAGCCGCCATGGTTTACGACAACGCCGCCATTAAGCTCCGTGGGCCGGACGCCCTCACCAATTTCGCAACCCCGCCACCGCCGCCGGAGAAGGAAGCGGAGGTTAATATCCCCTCTGTTTCCGGGTCCTACTACGACTCCGGCGAGGAGTCTCACAATTTGTCATCCCCAACTTCGGTTCTCCACTTCAGAACTCAGTCGCCGGAAGAATCCGAAAACCCCCCAAAACCCGAAGCGTTTCAGAAACCGTCGCCGCCGTCGCTGGCCGACGACCAATTTCACGAATGTCAAGGCGAAACCTCTTTCTCCGGAGAATATTCCACCGATTTCCCCAAGTTCGAGGACATATTCCAACTTCCGAGCCCCGACATGTCGATTTTCTTCGACGAACAGCCGCTGTTCTTCGAGGAGAGCATTTGGAACGAAGGTTTCAGCCAGATTTTCACCAACATGCCGGAAGATTTGGGATCGCCGGTGCTATCTTCTTCGATTAGCCAAGGGGGCGACGATTATTTCCAAGATATTTTATTGGGGTCCGACCCTTTGGTGGTTCTC | 993 | 54.98 | MEDTLFCPVKFTEHRNFTKKFSTKKQQQNQHHPPENRVVRISVTDPDATDSSSDEEEGEFFERQRVKKYVNEIKIESGSRNSLVPGCRKRPAGEGSEFRRPVKPPPTTNGKKFRGVRQRPWGKWAAEIRDPARRQRVWLGTFDTAEEAAMVYDNAAIKLRGPDALTNFATPPPPPEKEAEVNIPSVSGSYYDSGEESHNLSSPTSVLHFRTQSPEESENPPKPEAFQKPSPPSLADDQFHECQGETSFSGEYSTDFPKFEDIFQLPSPDMSIFFDEQPLFFEESIWNEGFSQIFTNMPEDLGSPVLSSSISQGGDDYFQDILLGSDPLVVL | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 569022 | 570014 | - | MC10g0089 | Mch10g0100 | 677193 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0100 | 331 | Gene3D | AP2/ERF domain | 111 | 170 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0100 | 331 | SMART | rav1_2 | 112 | 175 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0100 | 331 | MobiDBLite | consensus disorder prediction | 186 | 218 | - | - | |
Mch10g0100 | 331 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 39 | 225 | IPR050913 | - | |
Mch10g0100 | 331 | MobiDBLite | consensus disorder prediction | 166 | 237 | - | - | |
Mch10g0100 | 331 | FunFam | Ethylene-responsive transcription factor 2 | 111 | 170 | - | - | |
Mch10g0100 | 331 | ProSiteProfiles | AP2/ERF domain profile. | 112 | 169 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0100 | 331 | CDD | AP2 | 111 | 169 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0100 | 331 | PRINTS | Ethylene responsive element binding protein signature | 113 | 124 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0100 | 331 | PRINTS | Ethylene responsive element binding protein signature | 135 | 151 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0100 | 331 | MobiDBLite | consensus disorder prediction | 80 | 118 | - | - | |
Mch10g0100 | 331 | Pfam | AP2 domain | 112 | 161 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0100 | 331 | MobiDBLite | consensus disorder prediction | 18 | 60 | - | - | |
Mch10g0100 | 331 | SUPERFAMILY | DNA-binding domain | 112 | 169 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0100 | Mch-Chr10:569022 | Mch6g1933 | Mch-Chr6:21837836 | 7.60E-64 | dispersed | |
Mch4g1298 | Mch-Chr4:15954628 | Mch10g0100 | Mch-Chr10:569022 | 1.52E-17 | dispersed | |
Mch7g0231 | Mch-Chr7:2846431 | Mch10g0100 | Mch-Chr10:569022 | 3.55E-40 | transposed | |
Mch10g0100 | Mch-Chr10:569022 | Mch10g0865 | Mch-Chr10:6087117 | 1.10E-52 | wgd | |
Mch10g0100 | Mch-Chr10:569022 | Mch5g0450 | Mch-Chr5:3040136 | 4.57E-43 | wgd | |
Mch10g0100 | Mch-Chr10:569022 | Mch6g1869 | Mch-Chr6:21223966 | 1.30E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42410 | PF00847 | AP2 | 3.40E-15 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0100 | - | - | - | 0.0 |