Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0102 ATGATGAAGAGTAGTTTCTTCTCCGTCTTCGTTGAATTTTTTTTGTTTTCAGCGGTCATCTGGCCGGGGGTTCTCAGTGAGCCTGTTGAAGACAAGCAAGCTCTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAATTGGAATGAGAGCAGATCAGTCTGCAAAGACTGGACAGGAGTATTATGCAACACTGATCAGTCTAGAGTAGTAGTTCTACGATTACCTGGGACCGGGTTGCGTGGTCCAATCCCGGTGAACACTCTTAGCCGCCTATCCGCACTCGAGACTCTAAGCCTCAGAATAAATAGGATATCGGGACCTTTGCCCCCTGATTTTTCCAAGCTAGAAAGTTTGAGTTTCTTATATCTGCAATACAACAAGTTTTCTGGCCCTTTGCCTTTGGATTTTTCAGTTTGGAAGAACCTTAGTGTGGTCGATCTTTCAAACAATTTATTTAATGGGAGTATTCCTTCTTCTATCTCAAAGTTGAGTAATCTGACAGTTCTCAGTCTTGCAAACAACTCGCTTTCGGGCGAAATTCCAGACCTTGAGATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGTATTCTCTGGAAACAATCTTACTGCAGAACATGGTGCAGTTCCCCCATCTTTTCCGCTTCTGCCCCCTGATGTTCAACCGACTAGAAATCGCAAAGTACTGAGTGAATCTGCAATACTGGGTATTGCAATTGGTGGTTGTGTTATTGGGCTTCTTATACTAGCTATTTTGTTGACTGCTTTCTGGTTGAAAAAGGGTAAAGAAAATGATAGTTCCACCATGGAGCCCAAAAAGAAGGAAAGCTCTGTGAAGAAAAAGGGTTTTGATAGCCAAGAACAAAAGGACAACCTTACTTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGGGCATCTGCTGAGGTTCTCGGGAAGGGAACCTTCGGAGTGAGCTATAAGGCTGCTCTGGAGGACACGACGACGGTGGTAGTGAAGAGGTTGAATCAAGTTACAGTTGGGAAACGAGAATTTGAACAGCAGGTGGAGTTGATTGCAAACATTAAGCACGAGAACATCATTTCCTTAAGAGCATACTATTATTCAAAGGATGAGAAGCTTATGGTCTATGACTACTGCGCACAAGGGAGTGTGTCTGCAATGCTACACAATAAACAAGGCGAAGGTTTGTGTGTGTTAGATTGGGAAGCTCGGATGAAAATTGCTATCGGAGCGGCTCGAGGTCTTGCTCATATTCACGCAGAATCCGGTGCAAAATGTTGCCATGGAAACATCAAAGCCTCAAACATTTTCCTCAACTCTAAAGGATATGGCTGTGTATCTGACGTTGGTTTAGCCGTGTTGATGAATTCAGTTATGGTACCAGCAACGAGAACTCCTGGTTATCGAGCCCCGGAAGTGACCGACACTCGGAGGGCATCGGAAGCAGCAGACGTGTACAGTTTTGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCCCCGATTCACGTTGAAGGTTGTGATGAAGTTGTTAATTTAGTGAGGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTGGAGCTTCTCAGGTATCCAAATATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGCTGTCTTGTGTTGCAAAAATGCCTGAGCAGCGACCAAAAATGATGGATATAGCGTCGAGAATCGAGCAGGTTCGACTAGTGAGTAGTGGAACTCGACCATCGTCCGGGTCAAAGTCAGAGTATTCGACTCCAACTCGTGTAATTGAAATCGGTTCTTCTTCACATTTACATTGA 1902 44.27 MMKSSFFSVFVEFFLFSAVIWPGVLSEPVEDKQALLDFFHNIPHSPSLNWNESRSVCKDWTGVLCNTDQSRVVVLRLPGTGLRGPIPVNTLSRLSALETLSLRINRISGPLPPDFSKLESLSFLYLQYNKFSGPLPLDFSVWKNLSVVDLSNNLFNGSIPSSISKLSNLTVLSLANNSLSGEIPDLEIPSLQRLDLSNNNLTGNVPQSLQRFPSWVFSGNNLTAEHGAVPPSFPLLPPDVQPTRNRKVLSESAILGIAIGGCVIGLLILAILLTAFWLKKGKENDSSTMEPKKKESSVKKKGFDSQEQKDNLTFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDTTTVVVKRLNQVTVGKREFEQQVELIANIKHENIISLRAYYYSKDEKLMVYDYCAQGSVSAMLHNKQGEGLCVLDWEARMKIAIGAARGLAHIHAESGAKCCHGNIKASNIFLNSKGYGCVSDVGLAVLMNSVMVPATRTPGYRAPEVTDTRRASEAADVYSFGVVLLELLTGKSPIHVEGCDEVVNLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMMDIASRIEQVRLVSSGTRPSSGSKSEYSTPTRVIEIGSSSHLH 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 592577 595847 - MC10g0091 Mch10g0102 677195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0102 633 FunFam pollen receptor-like kinase 1 298 403 - -
Mch10g0102 633 SUPERFAMILY L domain-like 40 215 - -
Mch10g0102 633 PANTHER OS05G0588300 PROTEIN 12 613 IPR050994 -
Mch10g0102 633 SUPERFAMILY Protein kinase-like (PK-like) 333 597 IPR011009 -
Mch10g0102 633 MobiDBLite consensus disorder prediction 284 304 - -
Mch10g0102 633 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 404 610 - -
Mch10g0102 633 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515(InterPro)
Mch10g0102 633 Pfam Leucine Rich Repeat 120 140 IPR001611 GO:0005515(InterPro)
Mch10g0102 633 Pfam Leucine Rich Repeat 97 118 IPR001611 GO:0005515(InterPro)
Mch10g0102 633 ProSiteProfiles Protein kinase domain profile. 329 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0102 633 Pfam Protein kinase domain 333 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0102 633 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Mch10g0102 633 Gene3D Phosphorylase Kinase; domain 1 293 403 - -
Mch10g0102 633 Gene3D Ribonuclease Inhibitor 28 240 IPR032675 -
Mch10g0102 633 Gene3D Transferase(Phosphotransferase) domain 1 405 611 - -
Mch10g0102 633 FunFam Probable inactive receptor kinase RLK902 28 187 - -
Mch10g0102 633 Pfam Leucine Rich repeats (2 copies) 168 203 IPR025875 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0102 Mch-Chr10:592577 Mch2g0784 Mch-Chr2:5394060 5.99E-143 dispersed
Mch6g1931 Mch-Chr6:21803876 Mch10g0102 Mch-Chr10:592577 1.46E-203 transposed
Mch10g0102 Mch-Chr10:592577 Mch6g1875 Mch-Chr6:21278047 1.94E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76986 PF00069 Pkinase 1.00E-36 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0102 - - - 0.0