Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0103 ATGGAAGACATACGGGGGCTGTTCTGTGGAGATTATGGCTGTTCCAGTGGTACTGAGAAACCATGCGGTTCTTTTGCTTGTAGTTATGGTTTTCTTTCTCATTCCTCTCCATGTCTCAGTCAAGCCCTGATCCTCTGTTTTGATCTTCTACTCTTGATCTTGGTTGTATCTAACGTTTTGGGGAAGTCAATGCCTAGAGTTCACATGTCGAATCGATTTCGTAGCCACACAGCTCTTCAGATCATCTCTGTTGTCTTCAATGGCTTTGTTGGATTGGTGTACCTTGGCTTGGGCATTTGGACTTTGGAGGAGAAGTTGAGGAAAGATCACACTGCTTTGCCATTGCAGGTTTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTATTGGTCAGCTCTATCATTAGCTTATGGACTAAACAGCTTCCAAGAACCTTGTTGCGCCTATTGTCCATTGTTGTGATCGTCTTTGCTGGGATTATTTGTGTCCTATCTGTTACCGATGCCATTTCGAGCAAAATGGTATCAGCCATGATCGTTTTAGATGTTCTATCTGTTCCGGGATCGGTTCTTTTGTTGCTTTGCTCTTTCAGTTGTTTCAGCCACGAAGAGAGTGAGGACAGTATCAATGGGACTGGAGTTTACACCCCATTAAATGGCGAGGCCAGTGAAAGTGGTAAGTTTGATCCTGTTACTCCATTAGCCAAAGCTGGATTGTTGAGTAAAGCTTCGTTTTGGTGGATGAATCCTTTAATGAAAAAGGGAAAGAAGAAGCCTCTTGAAAATGAAGATATACCAAAGATGCGCGAGGGAGATCAAGCGGAAAGTTGTTACTTGCAGTTCATAAACCATATGAACGAGCAGAAGAAAAACGATCCAAGTTCCCAGCCATCAATCTTTAAAGTCATCGTATCATGCCATTGGAGGAATATATTATTGTCTGGAATTTTCGCTTTGTTGAAGATACTCTTTGTCTCTGCTGGTCCTCTGCTTCTCAATGCCTTCATTCTAGTTGCTCAGGGACAACAAAGTTTCAAATACGAAGGCCTTGTACTTGCCCTTTCACTTTTCTTTTCGAAAAGCATTGAATCCATATCACAACGGCAATGGTACTTCAGAAGCAGGCTTGTTGGTCTTAAAGTCAGGTCCTTGCTCTCAGCAGCCATTTATAAAAAGCAATTGCGATTGTCCAATGAAGCTAAATTGATTCACTCAAGTGGTGAAATCATGAACTATGTCACGGTAGATGCGTATAGGATTGGAGAGTTCTCATACTGGTTCCACCAATCTTGGACCACGAGTCTTCAGCTATGTATTGCACTTCTGATCCTCTACAAAGCAGTGGGAATAGCAACCATTGCCGCTTTTGTGGTAATACTTCTATGTGTATTTGGCAATACTCCTATTGCCAAGCTACAACATAAGTTTCAGAGCAAATTGATGGCAGCACAAGATAAGAGACTAAAGACGTTCACAGAGGCTCTTGTAAACATGAAGGTTCTCAAGTTATATGCATGGGAAACCCATTTCAAGAATGTAATTGAGAAGTTAAGAAATGAGGAGCACAAGTGGTTGACAGCCGTGCAATATCGAAAGGGATATAATGGCATTCTCTTTTGGTCATCTCCTGTTCTCGTTTCAGTTGCAACCTTTGGGACATGTCATTTTTTGAACATTCCACTGCACGCCAATAATGTTTTCACTTTTGTATCTACATTGCGTCTTGTTCAAGATCCTGTTAGATCTATGGCTGATGTCATAGCGGCGATCATTCAAGCAAGGGTTTCATTTACACGTATCGTTAACTTTTTGGAGGCACCAGAGCTGCAAAGCTCAAGTGTTTGTAGAAAGCATGTGAATGTGAGTGATAACTGCTCCATTCGGATAAGTTCAGCATCTTTCTCATGGGAAGAGAATTTGTCGAAGCCTACTCTTCGAAATATTAATCTTGAGGTTAAGCCAGGTTCAAAGTTTGCTATATGTGGAGAAGTTGGCTCAGGAAAATCAACACTTCTAGCAGCCATTCTTGGTGAAATTCCAAATGTTGAGGGAAATATTCAAGTTTATGGAAAGATTGCGTATGTGTCTCAAACAGCATGGATCCAAACAGGGTCCATACGAGATAACATTTTATTTGGCTCTGAAATGGATGATTCGAGATATCGAGAAACACTCGAGAAGTGTTCATTGCTGAAGGACCTTGAGTTGCTTCCTTATGGTGATCTCACTGAGATTGGGGAAAGAGGAGTGAATCTCAGTGGTGGGCAAAAGCAGAGGATTCAACTAGCCCGTGCGCTGTATCAAAATGCTGATATATATCTTCTGGACGATCCGTTCAGTGCTGTGGATGCACATACTGCTACAAGTTTGTTCAATGGATATGTTATGGAAGCACTCTCGGGAAAAACTGTTCTTCTCGTGACTCATCAAGTTGATTTCCTGCCTGATTTTGACTCTGTTCTGCTGATGTCAGATGGGGAGATTATAGAAGCAGCTCCTTACCATCAGTTGTTGGCACATAGCAAAGAATTTCAGGACCTTGTCAATGCACACAAAGAGACTGCTGGTGCTGAAAGGCTTGCAGATTTATCTGCTACCAAGAGTACGAGGACATCTGGTAGAGAGATCAAGCAATCTTATACGGAGAAACAATCTGTAACATCCGAAGCTAATCAGTTAATTAAGCAGGAGGAGCGAGAAGTTGGAGACTCGGGATTCAAGCCTTATATTCAGTATCTCAATCAGAACAAAGGGTTCTTTTACTACTCCTTAGACATTCTCTCCCAATTAGCATTTGTGGGATGTGGTGTAGCACAAAACTCTTGGATGGCTTCTAATGTCGACAATCCCGCCGTTAGCAACTCCCACTTGATCTTAGTTTACTTGTTGATTGGAGTTGCTTCAACACTATTCTTGGTTTCTAGATCTCTTTTCACAGTTCTTTTAGGTCTCCAATCATCGAAATCATTATTTTCTCAGCTACTAACGTCTCTTTTTCGCGCTCCGATGGCTTTCTATGACTCCACACCTCTTGGAAGGATACTTAGTCGGGTCTCAATGGATCTCAGTATTGTGGATCTTGATGTCCCATTCAGTTTAATATTTGCTATTGGCGCAACCTCTAATACCTATGCAGCGCTCGGAGTTTTAGCTGTAATCACATGGCAAGTTCTATTCATCTCCATACCGATGGTCATTTTGGCAATTTGCTTGCAGAGATACTACTTTGCTTCAGCGAAAGAACTCATGCGTCTTAATGGGACGACAAAGTCGATGGTAGCAAACCATTTGTCCGAATCCATAGCTGGAGCAATGACAATAAGAGCTTTTGAAGAGGAGGAGCGTTTCTTCCAAAAAAATCTTGAATTCATTGATGGAAATGCCAGTCCTTTCTTTCACAATTTTTCGGCCAACGAGTGGTTGATACAGCGGTTAGAAATGCTCAGTGCAGTGGTACTTGCTTCCGCTGCATTATGCATGGTATTGCTACCAACTGGAAGCTTCAACCCCGGTTTCATTGGCATGGCAATCTCTTATGGCCTTTCTTTAAACGTGTCTCTGGTCTTTTCCATCCAGAATCAATGTACTGTAGCCAATCACATCATTTCTGTAGAAAGATTAAACCAATACATGCATTTACCAAGTGAAGCTCCCGAAATCATCAAAGAGAACCGCCCACCAACCAACTGGCCCTCTATCGGCAAAGTGGAGATAGTCGACTTGAAGATAAGATACAGACCCAACACACCCCTTGTTCTTCATGGTATAAGCTGCACATTTGAAGGAGGACATAAGATTGGTATTGTTGGTCGCACTGGCAGTGGAAAGTCTACTCTTTTAAGTGCAATATTCCGCTTAGTCGAGCCAGCTGGAGGAAAGATTATCGTCGATGGTATTGATATCTGCTCAATTGGACTTCATGATCTGCGCTCGCGTTTTGGAATTATACCTCAAGATCCAACTCTTTTTAAAGGAACTGTTAGATACAACTTAGATCCCATAGCTCAGCATACTGATGATGAAATATGGGAGGTACTCGGTAAGTGTCAACTTAGAGAGGCTGTTGAAGAGAAAGAAGCGGGATTGGATTCCTTGGTTGTGGAAGATGGTTCGAACTGGAGCATGGGACAGCGCCAGCTTTTCTGTTTAGGTCGTGCGCTTTTGAGGAGAAGTCGGATATTGGTGCTCGATGAAGCAACTGCATCAATAGACAATGCCACGGATATGATTCTGCAAAAGACTATTCGAACCGAATTTGCAGACTGTACTGTGATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATAAGTGATGGGAAAATAGCAGAATATGACGAACCTACAGCGTTGATCAAGAGAGAAGGTTCTCTATTTGGAAAACTTGTGAAGGAGTACTGGTCTCACTCACAGTCTGACTCTGTAGAATGA 4449 42.28 MEDIRGLFCGDYGCSSGTEKPCGSFACSYGFLSHSSPCLSQALILCFDLLLLILVVSNVLGKSMPRVHMSNRFRSHTALQIISVVFNGFVGLVYLGLGIWTLEEKLRKDHTALPLQVWLSASFHGFTWLLVSSIISLWTKQLPRTLLRLLSIVVIVFAGIICVLSVTDAISSKMVSAMIVLDVLSVPGSVLLLLCSFSCFSHEESEDSINGTGVYTPLNGEASESGKFDPVTPLAKAGLLSKASFWWMNPLMKKGKKKPLENEDIPKMREGDQAESCYLQFINHMNEQKKNDPSSQPSIFKVIVSCHWRNILLSGIFALLKILFVSAGPLLLNAFILVAQGQQSFKYEGLVLALSLFFSKSIESISQRQWYFRSRLVGLKVRSLLSAAIYKKQLRLSNEAKLIHSSGEIMNYVTVDAYRIGEFSYWFHQSWTTSLQLCIALLILYKAVGIATIAAFVVILLCVFGNTPIAKLQHKFQSKLMAAQDKRLKTFTEALVNMKVLKLYAWETHFKNVIEKLRNEEHKWLTAVQYRKGYNGILFWSSPVLVSVATFGTCHFLNIPLHANNVFTFVSTLRLVQDPVRSMADVIAAIIQARVSFTRIVNFLEAPELQSSSVCRKHVNVSDNCSIRISSASFSWEENLSKPTLRNINLEVKPGSKFAICGEVGSGKSTLLAAILGEIPNVEGNIQVYGKIAYVSQTAWIQTGSIRDNILFGSEMDDSRYRETLEKCSLLKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVMEALSGKTVLLVTHQVDFLPDFDSVLLMSDGEIIEAAPYHQLLAHSKEFQDLVNAHKETAGAERLADLSATKSTRTSGREIKQSYTEKQSVTSEANQLIKQEEREVGDSGFKPYIQYLNQNKGFFYYSLDILSQLAFVGCGVAQNSWMASNVDNPAVSNSHLILVYLLIGVASTLFLVSRSLFTVLLGLQSSKSLFSQLLTSLFRAPMAFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAIGATSNTYAALGVLAVITWQVLFISIPMVILAICLQRYYFASAKELMRLNGTTKSMVANHLSESIAGAMTIRAFEEEERFFQKNLEFIDGNASPFFHNFSANEWLIQRLEMLSAVVLASAALCMVLLPTGSFNPGFIGMAISYGLSLNVSLVFSIQNQCTVANHIISVERLNQYMHLPSEAPEIIKENRPPTNWPSIGKVEIVDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRYNLDPIAQHTDDEIWEVLGKCQLREAVEEKEAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKIAEYDEPTALIKREGSLFGKLVKEYWSHSQSDSVE 1482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 607679 614752 + MC10g0092 Mch10g0103 677196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0103 1482 Pfam ABC transporter 645 779 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch10g0103 1482 Gene3D - 603 872 IPR027417 -
Mch10g0103 1482 CDD ABCC_MRP_domain1 627 827 - -
Mch10g0103 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 850 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch10g0103 1482 SMART AAA_5 1262 1454 IPR003593 GO:0016887(InterPro)
Mch10g0103 1482 SMART AAA_5 654 827 IPR003593 GO:0016887(InterPro)
Mch10g0103 1482 Gene3D - 1219 1471 IPR027417 -
Mch10g0103 1482 CDD ABCC_MRP_domain2 1234 1454 - -
Mch10g0103 1482 CDD ABC_6TM_ABCC_D2 926 1211 IPR044726 GO:0140359(InterPro)
Mch10g0103 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1463 IPR027417 -
Mch10g0103 1482 ProSitePatterns ABC transporters family signature. 752 766 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch10g0103 1482 Gene3D ABC transporter type 1, transmembrane domain 884 1217 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch10g0103 1482 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359(InterPro)
Mch10g0103 1482 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 225 1471 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Mch10g0103 1482 Pfam ABC transporter 1253 1401 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch10g0103 1482 FunFam ABC transporter C family member 5 885 1217 - -
Mch10g0103 1482 Gene3D ABC transporter type 1, transmembrane domain 302 602 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch10g0103 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 850 IPR027417 -
Mch10g0103 1482 FunFam ABC transporter C family member 10 295 608 - -
Mch10g0103 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1236 1470 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch10g0103 1482 SUPERFAMILY ABC transporter transmembrane region 299 605 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch10g0103 1482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 926 1199 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch10g0103 1482 FunFam ABC transporter C family member 3 1219 1471 - -
Mch10g0103 1482 FunFam ABC transporter C family member 10 611 863 - -
Mch10g0103 1482 SUPERFAMILY ABC transporter transmembrane region 921 1216 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch10g0103 1482 Pfam ABC transporter transmembrane region 312 579 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch10g0103 1482 Pfam ABC transporter transmembrane region 937 1179 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch10g0103 1482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0103 K05666 - - csv:101210136 2450.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0103 Mch-Chr10:607679 Mch9g0261 Mch-Chr9:1959981 0 dispersed
Mch10g0103 Mch-Chr10:607679 Mch9g0747 Mch-Chr9:5569844 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48