Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0107 ATGATGGAGAATATGCAGTATGCCGAGGAGCTTGTGAGGGAGTTCCTTGTGTTTAGGGGGTTTACAAGTACTCTTCAAGCTTATGAGAGTGAGCTGAGCACAGATATCGGAAAAGGGTTTCAAGTGGATAAGATTTTAGATTTAATATTCTCAATATATATTCCTAAATTTGAGGCAGAAAAGTTGGTGGGGCTGCTAGTTTTTTTCAAGCAATGCCTTGCTTCTTCATCTGACAATACACTTCTTTCAACCATGTCAAAATTGGAGGTTTCCATCCTTCGTTACTATATGGTATATGCCATACAATCTGGAAGGCCAGACAAAGTTTTGGAGTTTCTTAAAATAAATGGCAACGATCTACTGCAGAGGACTAGAGATTGGACTCCATGGTTTGCCATGCCATACTTAAAGAATCCAAAGTTTGATCCCAACTTTCATGTCTATTTTACAAAGGAGTGGTATGAAGCGCTACATGTTTCTGTAAGGAATTTCTTCAGCGAAGTCTTCAATGGTACTCGCATTCCTGCCCTACTAAAGCTCAGTTCAGAGAAGAATACAGTTAATCATCTTAAAAGAGATATCAAGCAGCTAAATCTTAAATTAGCACAACTTCAGGCTTTGTTAGAGGAGAAAGAGGCTCATCTGTGCCACTTTAGAGGCTTAATGAGCAGTTCTTCAAGTATGGTGCACGACGAGAATGTTCCTTCATCAAGTGATGCCCAGGAGACTTGTGCCTCTCCAGCTACACAAGTTGGGGAACCACGACTGGCTCGAGATGGGGTTTTAGCAGGGTCTACTGCTTCAAATGAAAACTCAAATTCTTCATTAACTCCTTGCAGCGGAGATGTTGGTGATCCTAGTCATAGTTGTGATGATGGTCGTGAAATGGAGAATAGCGGAGAAGTGCATGTACAAGAAGAATTTCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGTCGTTGCCGTTTCTCTGCATCTGGAACCAATGTAGCAAGTGCTTCTTTGGATGGAACAGTCAGGATATGGACATACGACTCATCCACTCCATCATCTAGAAATGCAACAATTTACTGTGGAGCAGAGATTATGTCACTCGATTGGGAGTGTAAATCTGATCGCCTACTTCTAATTGGTACTGCTGATGCGGGCATTAAAGCATGGAATGTTGATGCTAAGAGAGTTGTGTGTGATCTCAACACGACTGATATGTTCCCTAGTGTGTTGGATATCAAGTGCAGTCCTGTTGAATCTATTTTCGTGTCTGCAGCAGCATCTAGAGGGCATGGTTCAAGTTATGTGGATAGTATGGGGTTTGCTTCCTTAACAGTATGGAACATGAGAACATGGAAGGCAATGTCAGTCCTTCCTCTTGGTAAGGATCCACCTGCAATCACTTCAATTTGCTTCAATCATAACGGAAAGATTTTAGCGGCAGCTGCTACTGATGGAATGATTCACATGTTTGACATGTCTGCTTGTCTACAAATTACAGGGTGGCCTGCACATGATTCTGCCATAAACTCGATTCTTTTTGGGCCAGATGAAACTAGCATGTTTACCTTAGGGTCAGATGGGAAGATATTTGAATGGAGCTTGCATAATCAAGGTCAAGTTCTGTGGTCAAGAAATAATAGCAGATTTTGTGATCCCGAGAGCTCTCTATCTTTGAGACATGAAATGGCTTTGGATGCTAATGGAAAGAGGCTCTTGGCAACATCAAGTTCAGTGAGAGCACCCATATACCAGGTGGGGGGTCGAATAGGTGGATTGAAAACTCTTCCACACACCGCAGCGATAACTACGGTGGATTGGCACCCAACTTCGCCCGTGTTCTTGACTGGATCTGCCGATCACTCAGTTCGAGTTACTTCTATTTCTTGA 1905 42.47 MMENMQYAEELVREFLVFRGFTSTLQAYESELSTDIGKGFQVDKILDLIFSIYIPKFEAEKLVGLLVFFKQCLASSSDNTLLSTMSKLEVSILRYYMVYAIQSGRPDKVLEFLKINGNDLLQRTRDWTPWFAMPYLKNPKFDPNFHVYFTKEWYEALHVSVRNFFSEVFNGTRIPALLKLSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCHFRGLMSSSSSMVHDENVPSSSDAQETCASPATQVGEPRLARDGVLAGSTASNENSNSSLTPCSGDVGDPSHSCDDGREMENSGEVHVQEEFPEVKVEFQETFLGHTSPISRCRFSASGTNVASASLDGTVRIWTYDSSTPSSRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGSSYVDSMGFASLTVWNMRTWKAMSVLPLGKDPPAITSICFNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSMFTLGSDGKIFEWSLHNQGQVLWSRNNSRFCDPESSLSLRHEMALDANGKRLLATSSSVRAPIYQVGGRIGGLKTLPHTAAITTVDWHPTSPVFLTGSADHSVRVTSIS 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 627885 635080 - MC10g_new0015 Mch10g0107 677200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0107 634 Gene3D - 265 438 IPR015943 GO:0005515(InterPro)
Mch10g0107 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 600 634 - -
Mch10g0107 634 Coils Coil 180 214 - -
Mch10g0107 634 MobiDBLite consensus disorder prediction 264 282 - -
Mch10g0107 634 Pfam WD domain, G-beta repeat 316 350 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 Pfam WD domain, G-beta repeat 599 630 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 SUPERFAMILY WD40 repeat-like 310 630 IPR036322 GO:0005515(InterPro)
Mch10g0107 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 Pfam Anaphase-promoting complex subunit 4 WD40 domain 464 518 IPR024977 -
Mch10g0107 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Mch10g0107 634 PANTHER OS05G0299300 PROTEIN 2 633 - -
Mch10g0107 634 MobiDBLite consensus disorder prediction 227 303 - -
Mch10g0107 634 MobiDBLite consensus disorder prediction 287 303 - -
Mch10g0107 634 Gene3D - 439 634 IPR015943 GO:0005515(InterPro)
Mch10g0107 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 600 634 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 SMART WD40_4 456 497 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 SMART WD40_4 312 351 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 SMART WD40_4 498 539 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 SMART WD40_4 357 396 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 SMART WD40_4 594 632 IPR001680 GO:0005515(InterPro)
Mch10g0107 634 MobiDBLite consensus disorder prediction 227 248 - -
Mch10g0107 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 540 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0107 K24760 - - csv:101209643 1139.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32