Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0108 ATGGCTGCTGCTGCTTTGTTGGCTTTCGCTTTTGCATGCCTTATCAAGGCTTGCACGGCGAGCCAAATTGGTATCAGAGCGAGGTTGCTGGCAAGTGATCAAGGCAAAACATGGATTTCTGATAATGGAACTTTTGCGTTTGGGTTTAGTCCGACTAGTGGCGGTAGCAGCATGGCTACTGACCGGTTTGTGCTTGCGGTCTGGTTCGCGGAGCTCCCGAGGGATAGAACTTTAATCTGGTCGGCTAACAGAAACTCTCCAGTCTCCAAGAATGCGATTGTGGAGCTCGACGCAACCGGAAACCTCGTCCTCACCGACGGCGGCGCCGCCGTCTGGTCCTCCAATACCTCCGGAGCCGGAGCAGAGTTTGCCGAAATGTCGGAATCCGGCAATTTCATCCTCTTCAACGCCGAACGGAACCCTATCTGGCAGAGCTTTTCACACCCATCCGACACTCTCCTCCCGAATCAACCTCTCTCGGTCTCACTAGAGCTCACAACATCAAAATCCCCCTCCCATGGCGGATATTACGCCCTCAAAATGCTCCAACAGCGCACCACTCTCAAGCTCGCCCTAACATTCAATTTGCCAGAAAATTACGAGGGTTTGCCCGAATCTTACGCAAATTACTCTTACTGGTCGGCCCCTGCAATTTCCAATGTCACTGGTGAAGTAATCGCAGTTCTAGATGAAGGCGGAAGTTTTGGCGTGGTGTACGGCGACTCCTCTAATGGCGCGGTATACTTCTACAAAAACGATAACGATAATGGGGGTTTATCAGCATCGACAAATCAGTCGATTCGTAACGTTCGCACACAAGTTATTCGACGATTGTCCTTAGAGAGTAATGGGAACTTGCGGTTGTATCGATGGGATGATGATGTTAATGGATCGCGCCAATGGGTCCCGGAATGGGCGGCGGTTTCGAATCCCTGTGATATTGCCGGAATCTGTGGAAATGGAATTTGCAATTTGGATAAGAGCAAGACAAATGCGTCTTGCACGTGCTTGCCGGGGACGTTCAAGGACGACGGCGGCAGCCAGTGCTTTGAGAATTCGTCATTGGTGGGGAAATGCGGCGGTTCAAATCATCACACTCCGGCAACAGAGTTCAGGATTTCTCCCGTTCAGCAAACAAATTACTACTACTCTGAGTTCTCTGTGATTGCAAATTATAGTGATATTAATACGGTATCGAAATGTGGTGATGCTTGCTTATCTGATTGTGAGTGTGTTGCTTCTGTTTATGGACTTGACGATGAGAAGCCTTATTGTTGGGTGTTGAGAAGCTTAGATTTCGGTGGGTTTGAGGATGCTGGCTCAACTCTCTTCGTTAAGGTTAGGTCCAATGGCTCAGTACCAGAAGCCAATGGGCCAGGAGCTGAAGGAGATTCTTCAGGTAGTGCTAGAGAAAAGGCTACGGTAATTCCTGTGGTTCTGGGTATGGCTCTTCTGATTGGGCTGCTGTGTCTGTTGTTATATTACAATGTTCGTAGAAGAAGAGCTTTGAAGAGAGCCATGGAGAGCTCTCTTATCTTGTCTGGAGCTCCCATGAGCTTCACCCACCGCGATCTGCAGATTCGGACGAACAATTTCTCTGAGTTGCTTGGAACAGGGGGATTTGGAAGTGTATATAAAGGAAGCCTTGGAGATGGGACTTTGGTAGCTGTGAAGAAACTAGACAGAGTTTTCCCTCATGGAGAGAAGGAGTTTATAACTGAAGTTAATACAATTGGATCTATGCATCACATGAACTTGGTTCGACTCTGTGGATACTGCTCGGAAGGATCGCATAGGCATCTAGTATATGAATTTATGAAAAATGGGTCATTGGACAAATGGATATTTCCAACACATCATAATCAAGACAGAGTTTTAGATTGGTCGACTCGGTTTCACATAGCTGTTGGCACGGCGCAAGGGATTGCTTATTTCCATGAACAATGCAGAAATAGGATCATACACTGTGACATCAAGCCAGAAAACATTCTGTTGGATGAAAATTTTTGTCCAAAAGTTTCAGACTTTGGTCTGGCTAAGCTGATGGGAAGAGAGCACTCACATGTTGTAACAATGGTGAGAGGGACAAGAGGATATTTGGCTCCAGAATGGGTTAGTAATCGCCCCATCACTGTTAAAGCTGATGTCTATAGCTACGGAATGCTTCTCTTGGAGATTGTTGGTGGCAGAAGAAACCTTGATATGTCTTTTGATGCTGAAGACTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAATGGGACACCTTTTAAAGTTGCAGATAGGCGATTAGAAGGTGCAGTGGAGGAAGAAGAGCTGATGAGAGCTCTGAAAGTTGCATTTTGGTGTATTCAAGATGAAGTTGCCACGAGACCGACGATGGGAGACATTGTGAGGATGTTGGAAGGATCGACCGACGTCAATATGCCACCGATGCCACAAACAGTGGTGGAGCTGATGGAGGAAGGTTTAGATCAAGTTTATAGAGCCATGAAAAGAGACATCAATCAGTCAAGTTCCTTCACCATTAATAGCCATCCTTCATCTTTGGCTACCTGCAGCCACTCCACAATCTCTCCAAGATAG 2589 46.85 MAAAALLAFAFACLIKACTASQIGIRARLLASDQGKTWISDNGTFAFGFSPTSGGSSMATDRFVLAVWFAELPRDRTLIWSANRNSPVSKNAIVELDATGNLVLTDGGAAVWSSNTSGAGAEFAEMSESGNFILFNAERNPIWQSFSHPSDTLLPNQPLSVSLELTTSKSPSHGGYYALKMLQQRTTLKLALTFNLPENYEGLPESYANYSYWSAPAISNVTGEVIAVLDEGGSFGVVYGDSSNGAVYFYKNDNDNGGLSASTNQSIRNVRTQVIRRLSLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICNLDKSKTNASCTCLPGTFKDDGGSQCFENSSLVGKCGGSNHHTPATEFRISPVQQTNYYYSEFSVIANYSDINTVSKCGDACLSDCECVASVYGLDDEKPYCWVLRSLDFGGFEDAGSTLFVKVRSNGSVPEANGPGAEGDSSGSAREKATVIPVVLGMALLIGLLCLLLYYNVRRRRALKRAMESSLILSGAPMSFTHRDLQIRTNNFSELLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRHLVYEFMKNGSLDKWIFPTHHNQDRVLDWSTRFHIAVGTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAYKEMTNGTPFKVADRRLEGAVEEEELMRALKVAFWCIQDEVATRPTMGDIVRMLEGSTDVNMPPMPQTVVELMEEGLDQVYRAMKRDINQSSSFTINSHPSSLATCSHSTISPR 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 636424 641883 - MC10g0093 Mch10g0108 677201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0108 862 PIRSF SRK 1 854 IPR024171 GO:0004674(InterPro)
Mch10g0108 862 ProSiteProfiles Bulb-type lectin domain profile. 30 147 IPR001480 -
Mch10g0108 862 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 163 IPR036426 -
Mch10g0108 862 Pfam S-locus glycoprotein domain 265 339 IPR000858 GO:0048544(InterPro)
Mch10g0108 862 Gene3D Phosphorylase Kinase; domain 1 495 605 - -
Mch10g0108 862 FunFam serine/threonine-protein kinase PBS1-like 499 605 - -
Mch10g0108 862 CDD B_lectin 34 149 IPR001480 -
Mch10g0108 862 Pfam Protein kinase domain 533 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0108 862 ProSitePatterns Protein kinases ATP-binding region signature. 536 559 IPR017441 GO:0005524(InterPro)
Mch10g0108 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0108 862 SMART blect_4 29 149 IPR001480 -
Mch10g0108 862 SUPERFAMILY Protein kinase-like (PK-like) 510 803 IPR011009 -
Mch10g0108 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 606 812 - -
Mch10g0108 862 CDD STKc_IRAK 536 804 - -
Mch10g0108 862 FunFam Serine/threonine-protein kinase 25 147 - -
Mch10g0108 862 ProSiteProfiles Protein kinase domain profile. 530 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0108 862 Gene3D Transferase(Phosphotransferase) domain 1 606 813 - -
Mch10g0108 862 SMART serkin_6 530 802 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0108 862 PANTHER OS07G0415500 PROTEIN 28 838 - -
Mch10g0108 862 Gene3D - 30 148 IPR036426 -
Mch10g0108 862 Pfam D-mannose binding lectin 77 164 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0108 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0108 Mch-Chr10:636424 Mch4g1932 Mch-Chr4:21877475 3.77E-126 dispersed
Mch10g0108 Mch-Chr10:636424 Mch4g0198 Mch-Chr4:1323098 1.34E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g818 . . . . . . . . . . . . . . . . . Bhi01g01428 . . . . Mch10g0108 . . . . . . . . . . . . . . . . . Blo09g00049 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76987 PF00069 Pkinase 8.50E-47 CL0016 Mch PK