Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0115 GTTCATAGCCCAATTATCAAGCTCGGTCTTTATGGTAATCTGTATCTGAGCAATAACTTGCTTACTCTTTATGCGAAACGGTTTGGGCTGAAACAAGCACGCAACCTGTTTGATGAAATGCCTGACAAAGATGTGGTGTCCTGGACTACAATGCAGGCTGCTTATGTTAGGAACAGAAGCTACATTGAGGCTTTTGAATTGTTTGATTTGATGGTTATATTGGGTCATTGTCCAAACGAGTTCACACTTTCAACTTTGCTCCGTTCATGCTCGGAAACTGGAGAACTGGAGCTTGGAGCTTGTGTCCATGGTTATGCCATAAAGGGTGGCTTTGAGTCGAAGCCAGTTCTGGGCTGCACCTTGATTGATATGTATGCAAAGTGTGATTGCACTGAGGAAGCTTGTGAAGTTTTCAGAAATATGGACAATGCTGATACCGTTACTTGGACCGCGACGATTTCTTCATTGGTGCAAGCACAGAAATGGAATGAGGCTCTGCAATTATATATCACTATGATTGAGTCTGGGGTCACTCCTAATGAGTTCACTTTTACAAAACTTTTAGCCACAATCAACTTTCTGGATTTGAAATATGGGAAATTACTCCATAATCATGTGATAACATTTGGAGTCGATCTGAACGTACTTTTGAAGACGACCCTTGTTGATATGTACTCGAGATACCAAGAATTAGAAGATGCTATGAAGGTGGCAAATCAGACGGCTGAGAAAGATGTGCATCTATGGACCTCTATCATCTCTTGCTTCAATCAGAATCTGAAGGTAAAGGAAGCTATTGCTACATTACAGGAGATGAGGATATCTGGAATTCCGCCCAACAGTTTCACATATTCCAGTGTGTTAAGTGCCTGTACATTGATACCATCACTTGAATTAGGGAAGCAAATCCACTTGCAGGTAATCTTGGCTGGTTTGGAGGCTGATGTTTGCGCTGGGAGTGCACTAATTAATATGTACATGAAATGTTCTGACTCAATAAACGATGCCTTGAGAGTGTTTAGGACAATAACTTCCCCAAATGTTATTTGTTGGACTTCTTTAATATCTGGTCTAGCCGAACATGGTTGTGAGCAAGATTGTTACAGATATTTTCTGGATATGCAAGCAGCAGGGGTGCAGCCAAATTCTTTTACTCTTTCTAGCATCCTTGGGGCCTGCAGTTCAGCAAAATCACAAAATCGAACATCGATGTTCCATGGATATATACTAAAAATTAGAGCTCACCATGATATCATTGTTGGGAATGCTCTTGTGGATGCTTATGCTCGATCTAGGATGGTGGATGAAGCTTGGCGAGTGATTAGCACAATGAATCATCGAGATGCCATCACTTACACCAGCCTAGCAACGAGATTGAATCAGATGGGTGATCATGAAATGGCACTAAAAACCATAAGTTCCATGCGTGATGATAATGTTAGGAAGGATGAGGTTAGCTTGGCAAGCTTGATATCTGCAGCAACTGGCCTAGGCACAGTTAAAATTGGGGAGCAACTTCACTGTTATTCTTTGAAGTATGGCTTATATAACACCCGTTCAGTTAAAAATAGTTTGATTGACTTGTATGGCAAGGTTGGATGCTTGAAGGATGCTCAAAAAGCTTTTGAAGAAATAACCGAACCAGATGTGGTTTCTTGGAACGGAATGATATCTGTATTAGCACTCAATGGGCATGTCTCCTCCGCTCTCTCTGCCTTCGATAATATGAGATTGGCTGGCCTGAAGCCCGATTCTATCACGTTCCTATTGATACTTTCAGCTTGCAGTCAGGGTGGTTTGGTTGATTTTGGCATGCATTATTTCCAATCTATGAGAGAAATACATTATGTAGAACCAGAATTGGATCATTATGTTTGTTTAGTTGATCTCCTTGGCCGCGCTGGACAGCTAGAGAAGGCGATGGAAGTTGTTGAATCAATGCCATTCGAGGCAGATGCCAAGATCTACAAGACATTGTTGAGCGCCTGTAAATTGCACAAAAACATGCTGCTTGGAGAAGATGTCGCAAGAAGAGGCCTTCAACTTGACCCATATGATTCATCTTTCTATTTGCTTCTGGCCAACTTGTACGATGAATTGAACCGACCCGATTTGAGCAAAGAAACTCGTAAGCTAATGCGGGATCGTGGAGTGAGGAAGAGTCCCAGCCAGAGCTGGACAGAATTAAGCAATAGTATTCATCTCTTCATCACAGGAGATAGATCACACCCTCAGATCAATGATATCCAAGAAAAACTAGAATTCCTCAAAGCTGAGTTCAAGGTTAGGGGATTTTTGTATCATGGCGATGAAAATTCATCTCATCACAGTGAAAAACTAGCTCTTGCATTTGGTCTTATCAATTTGCCACCAAAAGCTGTTATACGTATAATGAAGAACATAAGCATTTGCAGAGAATGTCATGACTTTATATTGCTTGTCACAAAGGTTGCAGAGAGAGAAATAGTTGTGAGAGATGGGAGTAGACTCCATGTGTTCAAAAATGGCAGCTGCTCTTGCAGGCACTAC 2529 41.52 VHSPIIKLGLYGNLYLSNNLLTLYAKRFGLKQARNLFDEMPDKDVVSWTTMQAAYVRNRSYIEAFELFDLMVILGHCPNEFTLSTLLRSCSETGELELGACVHGYAIKGGFESKPVLGCTLIDMYAKCDCTEEACEVFRNMDNADTVTWTATISSLVQAQKWNEALQLYITMIESGVTPNEFTFTKLLATINFLDLKYGKLLHNHVITFGVDLNVLLKTTLVDMYSRYQELEDAMKVANQTAEKDVHLWTSIISCFNQNLKVKEAIATLQEMRISGIPPNSFTYSSVLSACTLIPSLELGKQIHLQVILAGLEADVCAGSALINMYMKCSDSINDALRVFRTITSPNVICWTSLISGLAEHGCEQDCYRYFLDMQAAGVQPNSFTLSSILGACSSAKSQNRTSMFHGYILKIRAHHDIIVGNALVDAYARSRMVDEAWRVISTMNHRDAITYTSLATRLNQMGDHEMALKTISSMRDDNVRKDEVSLASLISAATGLGTVKIGEQLHCYSLKYGLYNTRSVKNSLIDLYGKVGCLKDAQKAFEEITEPDVVSWNGMISVLALNGHVSSALSAFDNMRLAGLKPDSITFLLILSACSQGGLVDFGMHYFQSMREIHYVEPELDHYVCLVDLLGRAGQLEKAMEVVESMPFEADAKIYKTLLSACKLHKNMLLGEDVARRGLQLDPYDSSFYLLLANLYDELNRPDLSKETRKLMRDRGVRKSPSQSWTELSNSIHLFITGDRSHPQINDIQEKLEFLKAEFKVRGFLYHGDENSSHHSEKLALAFGLINLPPKAVIRIMKNISICRECHDFILLVTKVAEREIVVRDGSRLHVFKNGSCSCRHY 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 684050 686578 + MC10g0097 Mch10g0115 677208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0115 843 Pfam PPR repeat family 244 291 IPR002885 -
Mch10g0115 843 Pfam PPR repeat family 548 596 IPR002885 -
Mch10g0115 843 Pfam PPR repeat family 43 91 IPR002885 -
Mch10g0115 843 Pfam PPR repeat family 145 188 IPR002885 -
Mch10g0115 843 Pfam PPR repeat family 346 394 IPR002885 -
Mch10g0115 843 Gene3D Tetratricopeptide repeat domain 501 747 IPR011990 GO:0005515(InterPro)
Mch10g0115 843 FunFam Pentatricopeptide repeat-containing protein chloroplastic 97 196 - -
Mch10g0115 843 PANTHER OS07G0578800 PROTEIN-RELATED 403 746 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Mch10g0115 843 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 520 746 - -
Mch10g0115 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Mch10g0115 843 Gene3D Tetratricopeptide repeat domain 103 194 IPR011990 GO:0005515(InterPro)
Mch10g0115 843 Gene3D Tetratricopeptide repeat domain 195 297 IPR011990 GO:0005515(InterPro)
Mch10g0115 843 Gene3D Tetratricopeptide repeat domain 406 500 IPR011990 GO:0005515(InterPro)
Mch10g0115 843 Gene3D Tetratricopeptide repeat domain 298 405 IPR011990 GO:0005515(InterPro)
Mch10g0115 843 Gene3D Tetratricopeptide repeat domain 6 102 IPR011990 GO:0005515(InterPro)
Mch10g0115 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Mch10g0115 843 FunFam Pentatricopeptide repeat-containing protein chloroplastic 298 399 - -
Mch10g0115 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Mch10g0115 843 FunFam Pentatricopeptide repeat-containing protein chloroplastic 400 515 - -
Mch10g0115 843 NCBIfam pentatricopeptide repeat 551 585 IPR002885 -
Mch10g0115 843 NCBIfam pentatricopeptide repeat 46 80 IPR002885 -
Mch10g0115 843 NCBIfam pentatricopeptide repeat 147 181 IPR002885 -
Mch10g0115 843 NCBIfam pentatricopeptide repeat 349 382 IPR002885 -
Mch10g0115 843 NCBIfam pentatricopeptide repeat 248 280 IPR002885 -
Mch10g0115 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Mch10g0115 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Mch10g0115 843 Pfam PPR repeat 422 444 IPR002885 -
Mch10g0115 843 Pfam PPR repeat 523 546 IPR002885 -
Mch10g0115 843 Pfam PPR repeat 450 480 IPR002885 -
Mch10g0115 843 Pfam PPR repeat 120 142 IPR002885 -
Mch10g0115 843 Pfam PPR repeat 624 647 IPR002885 -
Mch10g0115 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Mch10g0115 843 Pfam DYW family of nucleic acid deaminases 775 842 IPR032867 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0115 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0115 Mch-Chr10:684050 Mch10g0173 Mch-Chr10:1038166 1.30E-172 dispersed
Mch10g0115 Mch-Chr10:684050 Mch8g1349 Mch-Chr8:9981470 1.67E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g789 . . . . . . . . . Cmo18g01310 . . . . . . . Bhi01g01420 . . . . Mch10g0115 . . . . . . . . . Cone5ag0899 . . Lsi05g01181 . . . . . . . . . . . . . . . Cma18g01279 . Car18g01193 . . . . . . . . . Cla05g00927 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014302 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 1 15