Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0143 ATGCCTTCTTGGTGGGGGAAGTCGTCATCCAAAGAAGTGAAGAAGAAAACGAGCAAGGAAAGTTTCATTGACTCATTACACCGTAAATTCAAGAATTCACCTGAAGGTAAAGTAAACGGCAGGTCAGGAACTTCTCGTAGGCGATGTGGTGCTGACACTATATCTGAGAAGGGGTCTAAATCACCTCTATCAGGATCACCATCACCTTCCAAAGAAGTATCCAGATGTCAAAGTTTTGCTGAAAGGTCACGTTCTCACCAACTTCCACTTCCACATCAGCACCCTGTAGGTGTAGGCCGCACAGATTCTGGGATTAGTGTGACTGCAAAATTAAAATTAGAGAGAAGCTCCAAGACATCTTCATTCTTACCCCTCCCTAGGCCTGCATGTATTCGGAGTAGGCCAGATCCTGCAGATTTGGATGGAGACTTGGTCACTGGTTCAGTCTCTGGTGAGTCCTCGAGTGATAGTGAAGATCCTAATGATTCACGTCAACGTAGTCCTCAGGCGACTGACTATGACATTGGGACTAGAACTGTGACCGGTTCTACCGAACCTTGTGCAACTCTCAAGGATCAGTCGCCTACTGTCTTGCAAATAAATTTAAGGGAGGGCAAACAAGCAGAAACTCTTTCACTTTCTCATAAGAATTCTTCACTACCCAAACGGAGGCCTTTAAGCAGCAATGTAACAAATCTACAAGTTCCTCGTCATGGGGCCTTTTTTAGCGCTCCAGATAGCTCCATGTCTAGTCCCTCTAGAAGTCCTATGAGAGTATTTAGCACTGAGCAAGTCATGAACACTGCCGTTTGGGCTGGAAAGGCTCACCCAGATGTCATTTTAGGTGGCTCTGGCCACTGTTCCAGTCCTGGTTCCGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCGGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCTGAATATTCTCCAGTACCTAGTTCTAGAAGGACTAGCCCCGGCCCTAGCTCCAGAATTCAAAGTGGTGCTGTTACACCTATTCATCCTAGAGCAGGAGCTCCACCTGCTGAGTCACAAACGTGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCTTCTCCATTTTCTCATTCAAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGTTGGAAGAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGCGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACATTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTGCTGAGCCGTTTACGGCATCCCAACATTGTGCAGTATTATGGTTCGGAGACAGTGGGTGATAAACTCTATATATACCTGGAGTATGTATCCGGTGGTTCCATCTATAAACTTCTTCAAGAGTATGGACAATTTGGGGAATTAGCAATTCGTAGTTATACTCAACAAATAATATCAGGGCTTGCATATTTACATGCTAAAACTACAGTGCACAGGGATATTAAAGGAGCAAATATACTTGTTGACCCAAATGGTCGCGTTAAGTTGGCAGACTTTGGGATGGCGAAGCATATCACAGGCCAATCATGTCCTCTGTCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCGAATGGTTGCAATCTTGCCGTTGATATTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTCGCGGCGATGTTTAAGATTGGTAATAGCAAAGAACTCCCAGTAATTCCAGATCACCTCTCAGACGATGGGAAGGATTTTGTGAGACAATGTCTGCAACGAAACCCACTTCATCGACCTACTGCTGCTCAACTTTTGGAGCATCCCTTCATCAAATATGCTGCACCTGTAGAAAGGCCTATTTTGAGCTCTGAACCTTCTGATGCAACTCCTGGGGTTACAAACGGAGTGAAGACTCTGGGTATTGGTCAATCACGGATTCCTACTAGAGTGGACTCAGACAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAAATCAACATTCCCAGAAACATATCATGTCCCGTTTCACCAATTGGAAGCCCTCTTTTGCACTCGCGATCACCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATATCAAGTCCACGAACCACATCAGGCTCGTCCACACCTCTGACAGGATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAATCTATATACTTGCAAGAGGGATTTGGAAGCATGCCAAAGTCCATAAACAATAGTCCGTACAGCAGTGGCCTCTCCTTTCATGATTCAAATCCTGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAACTGATACCAGAAAATGATATCTTGGGAAAACAGGTCGGGAGGTCTGCTTATGGCGAGTCTTACGACGGACAGCTAGTTTTGGCTGATCGAGTGTCCCGACAGCTGCTGAGAGATCATGTTAAAACAAACCCTTCTCTGGATTTGAGTCCTAGCCCTGCTTTGTCTGGCCGCATGAATGGTATCTGA 2697 45.94 MPSWWGKSSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNGRSGTSRRRCGADTISEKGSKSPLSGSPSPSKEVSRCQSFAERSRSHQLPLPHQHPVGVGRTDSGISVTAKLKLERSSKTSSFLPLPRPACIRSRPDPADLDGDLVTGSVSGESSSDSEDPNDSRQRSPQATDYDIGTRTVTGSTEPCATLKDQSPTVLQINLREGKQAETLSLSHKNSSLPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVMNTAVWAGKAHPDVILGGSGHCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRRTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQIISGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPDHLSDDGKDFVRQCLQRNPLHRPTAAQLLEHPFIKYAAPVERPILSSEPSDATPGVTNGVKTLGIGQSRIPTRVDSDRLAVHSSRVSKAVLHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTGCGGAIPYNHLKQSIYLQEGFGSMPKSINNSPYSSGLSFHDSNPDIFRGLQPGAHIFSELIPENDILGKQVGRSAYGESYDGQLVLADRVSRQLLRDHVKTNPSLDLSPSPALSGRMNGI 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 856718 864586 + MC10g0122 Mch10g0143 677236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0143 898 Gene3D Transferase(Phosphotransferase) domain 1 409 685 - -
Mch10g0143 898 SMART serkin_6 411 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0143 898 ProSiteProfiles Protein kinase domain profile. 411 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0143 898 MobiDBLite consensus disorder prediction 742 779 - -
Mch10g0143 898 MobiDBLite consensus disorder prediction 166 186 - -
Mch10g0143 898 MobiDBLite consensus disorder prediction 314 341 - -
Mch10g0143 898 MobiDBLite consensus disorder prediction 9 35 - -
Mch10g0143 898 MobiDBLite consensus disorder prediction 372 404 - -
Mch10g0143 898 CDD STKc_MEKK1_plant 410 667 - -
Mch10g0143 898 MobiDBLite consensus disorder prediction 1 186 - -
Mch10g0143 898 MobiDBLite consensus disorder prediction 746 779 - -
Mch10g0143 898 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 11 670 IPR050538 -
Mch10g0143 898 FunFam Mitogen-activated protein kinase kinase kinase 409 692 - -
Mch10g0143 898 MobiDBLite consensus disorder prediction 283 413 - -
Mch10g0143 898 Pfam Protein kinase domain 412 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0143 898 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524(InterPro)
Mch10g0143 898 SUPERFAMILY Protein kinase-like (PK-like) 409 749 IPR011009 -
Mch10g0143 898 MobiDBLite consensus disorder prediction 879 898 - -
Mch10g0143 898 MobiDBLite consensus disorder prediction 57 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0143 Mch-Chr10:856718 Mch1g1011 Mch-Chr1:13125884 7.85E-139 dispersed
Mch9g1883 Mch-Chr9:20482124 Mch10g0143 Mch-Chr10:856718 9.10E-23 dispersed
Mch4g1725 Mch-Chr4:20390179 Mch10g0143 Mch-Chr10:856718 5.90E-73 transposed
Mch10g0143 Mch-Chr10:856718 Mch6g2443 Mch-Chr6:26371577 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76990 PF00069 Pkinase 5.70E-71 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0143 K20717 - csv:101214961 1493.02