Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0145 ATGGGCGGCACTGCCGAGGAGATTGGACAACAGCTGGTATTCGATGTTGAGCATACTATATTTGTTGCGGTGGGCACGAATGTGGACGAGACCAAGACTACGCTAATTTGGGCTGTCCACAACTTCGCGGGGAAGAATTTTTGTCTGCTTCACGTTCATCCACCTCCCCCTGGTGTTGGTCTGATGTCAGCTCAACCTTTGTCATTTGGTGTGGGGATAAAAGATCATTTGCTTAGCGAAGGAAATGAAGGGCCATCGTCCAATACACTAAAAGAGCAGATAGCCAAGGCATTTGAGGAACCTGGAAGGCAGAAGCCTTTTGAACCTCTTAATCAATATGTTGCCATTCTTGCCAAACTGGGGACAAGCAGAATTACATTATTGCAGAACTCTGCAGATACTCAAGAAAAGGAGAATGCATTTGATGGAGTTTTAAGCAGGTTCAGATCTCAAGGTTTGGTGGATCCTAAATGCTCCAATAATGGAATCCTGGGTACTTCAAGGACAATACTATTGTTAAAGAATGAGGGTGTAAAAGAAAGGGGACGACCAGTTATCCAGGGTCCTGGTTTGCAAGAAGCCATGATTAATGTTAAGCCCATAAAAGAATTTGCAGGAGTGAAGGCCTGGGAAGAGGAAGATGCTGCGGGTGCAAAATTCAAGGCTAAATCAATAGAAAGCTCATGTATGGAGGAGGTGAAAGAAGGAAAAGAGATGGAAGAACTTTTAGAGAGAGAAAAATTAGAAGTAGAAAAGATGAACAAAGAGCGTGATGAGCTCTTGAAAGAACTACACGATGTTCAAGAGCAGACATTGTTACTCGGGAGAAAAGCTTCAGAGTACCAGTGTGATGTGAAGAAGTTGGAGGAGAAGCTGTTTGCAGCTGTTGACCTCTTAGTAAGCTTCAAGGAGAAACGGGATAAGTTGCAGATAGAGCACGAAGGTGCAATGAACAAGCTTAGACAACTGAAGAATATGGTTAAAGGTGAACCTCCATATTTTCGCAGTGCAGAAATGCCCACATTCTCATTCATGGAGATAATTGAGGCAACGAGAAATTTTGACCCTTCCTGGAAGATTGGCGAGGGAAGACATGGTAGTGTCTATAAAGGCCTCCTTCGCCACATGGATGTTGCTATAAAAATGTTTCCTTCATATGGTTCTCATTCCCAATCAAAGTTCCAATACGAGGTTGAGGTCTTGAGTAGGGTAAGGCATCCCAACCTGGTTTCAATTATTGGAGCATGTCCAGAATCTAGGTTAATTGTCTATGAGAATTTGAAAAATAGCAGCTTGGAAGACCAACTTGCCTGCAAAGATCACAATCGCCCACTTCCATGGCAAATAAGGATTCGTGTTGCTGCAGATATCTGCTCAGCTCTTATATTTCTCCATTACAGCAAGCCTTGCATTGTCCATGGAGATATAAAGCCAAGCAAAATCCTACTTGATGCCAACTTTATTGCCAAACTTGGAGGCCTGGGCATCTCTCGCTTGATCCCACGAGAAGAAAATGCCTTTAATTCTGCCTTCGCGTATGATATGTCAAAAGAAAATAATCCATATATTGATCCCGAATACCTTCAGACTGGAAGGTTCACTCCAGAATCAGACATCTACTCTTTTGGTGTTACTTTGCTGCGAATTCTAACTGGAAGAGCACCTTCGGGAATTGTAAAAGATGTAAAATGTGCTCTAGAAAATAACAAGATTGGTGCCATCTTGGACTCATCAGCTGGAGACTGGCCACATGATCTAGCAGAACAATTGGCTCTTGTGGCATTAAGATGCTGTGAGAGGGACAAATCGAATAGGCTTGACCTTGTCTCAGAATTATGGAGTGTTTTGGAGCCTATGAGATCCATTGCCTCAACATCCTTTTCGAGTATGAAGAAACATTCTCGAGTACCTGCCCAATTTACGTGTCCCATTTTTCAGGAAATCATGAAAGATCCACTCATTGCTGCAGATGGGTTCACATACGAAGCAGATGCTATAAGAGGATGGTTTGGAAGTGGCCACGACACTTCTCCAATGACAAATCTTAAACTCGAGCACTGTAATCTTGTGCCAAATTATGCTCTTCTAAATGCAATTCAGGAGTGGCAGCATCAACTATGA 2121 42.9 MGGTAEEIGQQLVFDVEHTIFVAVGTNVDETKTTLIWAVHNFAGKNFCLLHVHPPPPGVGLMSAQPLSFGVGIKDHLLSEGNEGPSSNTLKEQIAKAFEEPGRQKPFEPLNQYVAILAKLGTSRITLLQNSADTQEKENAFDGVLSRFRSQGLVDPKCSNNGILGTSRTILLLKNEGVKERGRPVIQGPGLQEAMINVKPIKEFAGVKAWEEEDAAGAKFKAKSIESSCMEEVKEGKEMEELLEREKLEVEKMNKERDELLKELHDVQEQTLLLGRKASEYQCDVKKLEEKLFAAVDLLVSFKEKRDKLQIEHEGAMNKLRQLKNMVKGEPPYFRSAEMPTFSFMEIIEATRNFDPSWKIGEGRHGSVYKGLLRHMDVAIKMFPSYGSHSQSKFQYEVEVLSRVRHPNLVSIIGACPESRLIVYENLKNSSLEDQLACKDHNRPLPWQIRIRVAADICSALIFLHYSKPCIVHGDIKPSKILLDANFIAKLGGLGISRLIPREENAFNSAFAYDMSKENNPYIDPEYLQTGRFTPESDIYSFGVTLLRILTGRAPSGIVKDVKCALENNKIGAILDSSAGDWPHDLAEQLALVALRCCERDKSNRLDLVSELWSVLEPMRSIASTSFSSMKKHSRVPAQFTCPIFQEIMKDPLIAADGFTYEADAIRGWFGSGHDTSPMTNLKLEHCNLVPNYALLNAIQEWQHQL 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 871994 878736 - MC10g_new0023 Mch10g0145 677238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0145 706 SUPERFAMILY RING/U-box 635 705 - -
Mch10g0145 706 ProSiteProfiles Protein kinase domain profile. 354 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0145 706 SUPERFAMILY Protein kinase-like (PK-like) 328 608 IPR011009 -
Mch10g0145 706 CDD RING-Ubox_WDSUB1-like 637 692 - -
Mch10g0145 706 Gene3D Transferase(Phosphotransferase) domain 1 427 637 - -
Mch10g0145 706 Coils Coil 299 326 - -
Mch10g0145 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 706 IPR013083 -
Mch10g0145 706 Pfam Protein tyrosine and serine/threonine kinase 359 608 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0145 706 SMART Ubox_2 639 702 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch10g0145 706 ProSiteProfiles U-box domain profile. 635 706 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch10g0145 706 Pfam U-box domain 636 704 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch10g0145 706 Coils Coil 236 270 - -
Mch10g0145 706 Gene3D Phosphorylase Kinase; domain 1 334 426 - -
Mch10g0145 706 PANTHER OS02G0152300 PROTEIN 214 700 IPR051348 -
Mch10g0145 706 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0145 Mch-Chr10:871994 Mch2g0903 Mch-Chr2:6134365 2.31E-93 dispersed
Mch10g0145 Mch-Chr10:871994 Mch5g0393 Mch-Chr5:2688821 1.45E-156 wgd
Mch10g0145 Mch-Chr10:871994 Mch7g0670 Mch-Chr7:11369338 1.51E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76991 PF07714 PK_Tyr_Ser-Thr 3.30E-34 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0145 - - - 0.0