Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0153 ATGGTGAGCCAGAGGCAAAAACTTGCTCGGAAAAAGTACAAAGAGGCACACCCAGAACTGTTCCCGAAAGCAGAGCCAACGCCACCAAAAGACCCGGAGAAGAAGAAGAAAAAGAAGAGTAAATTTAAGCGCAACAAGGCAGAATCGAAAGACCCAAATAAACCCTTCAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTGCCCGGGATGAAGCCGGGAGAAAGCTGCTTCATCTGCAAAGCCAAAGACCACATTGCCAAGCTCTGCCCAGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGTCGGAGACGCGGGCACAGCCTCAAGAATTGCCCGGACAAAAGTGAAGGGACAGAGGATAAGAAGTTATGCTACAACTGTGGTCAAACAGGACATTCGCTGGCTAATTGTCCACAACCTCTTCAAGATGGAGGAACTAAATTCGCCAATTGTTTTATTTGTAATGAAAGCGGACACTTGAGCAAGAACTGCCCGAAGAATACTCATGGTATCTACCCTAAGGGTGGTTGTTGTAAAACTTGTGGAGAAGTTACACATTTAGCTAAAGATTGTCCAAACAAAGGCACCAGAGTTTCTGCTGCGGCTGCATCTGGATACATGGAAATGCCGAGACGACCGGCAACGAGGCTCGTGAGTGGAGACGATCTTGAGGACGACTTTATGATCGATGAAGATCATTTGCAGATCAATGATGCAAAACCAGGAAAGAAAAAGGGACCCAAAGCGAACTCGGCATCTGGAATGGCTGTGAGGGACGAATGCAAGCTCAAGTTTATGGAACTGAAAGCGAAGAGGAACTATCGGTTCATTATATTCAAGATTGAGAATCAGGAAGTTGTTGTGGAGAAACTTGGAAGCCCCGAAGAAACTTATGAAGATTTCACTGCAGCTATCCCTCCCGATGAATGTCGCTATGCTGTGTTTGACTTTGATTTCACTACTGATGAGAATTGCCAGAAGAGCAAGATTTTCTTCATAGCATGGTCACCCGACACATCGAGAGTGAGAAACAAGATGGTGTATGCGAGCTCTAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAGTTGCAGGCCACAGATCCTAGTGAAATGAGCTTCGACATAATCAAAGCCAGAGCTTTTTGA 1164 45.36 MVSQRQKLARKKYKEAHPELFPKAEPTPPKDPEKKKKKKSKFKRNKAESKDPNKPFKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKSEGTEDKKLCYNCGQTGHSLANCPQPLQDGGTKFANCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPNKGTRVSAAAASGYMEMPRRPATRLVSGDDLEDDFMIDEDHLQINDAKPGKKKGPKANSASGMAVRDECKLKFMELKAKRNYRFIIFKIENQEVVVEKLGSPEETYEDFTAAIPPDECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSRVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 941772 947759 + MC10g0130 Mch10g0153 677246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0153 387 PANTHER OS04G0555800 PROTEIN 1 246 - -
Mch10g0153 387 Gene3D - 151 208 - -
Mch10g0153 387 Gene3D - 70 122 - -
Mch10g0153 387 FunFam Zinc finger CCHC-type-containing 9 151 203 - -
Mch10g0153 387 MobiDBLite consensus disorder prediction 1 65 - -
Mch10g0153 387 Gene3D - 123 150 - -
Mch10g0153 387 Gene3D Severin 248 386 IPR029006 -
Mch10g0153 387 ProSiteProfiles Zinc finger CCHC-type profile. 181 196 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 MobiDBLite consensus disorder prediction 8 33 - -
Mch10g0153 387 ProSiteProfiles ADF-H domain profile. 255 387 IPR002108 GO:0003779(InterPro)
Mch10g0153 387 SUPERFAMILY Retrovirus zinc finger-like domains 69 117 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 CDD ADF_cofilin_like 256 386 IPR017904 GO:0015629(InterPro)|GO:0030042(InterPro)
Mch10g0153 387 ProSiteProfiles Zinc finger CCHC-type profile. 127 142 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 SUPERFAMILY Retrovirus zinc finger-like domains 121 170 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 Pfam Zinc knuckle 99 115 IPR025836 -
Mch10g0153 387 Pfam Zinc knuckle 180 195 IPR025836 -
Mch10g0153 387 SUPERFAMILY Actin depolymerizing proteins 250 385 - -
Mch10g0153 387 FunFam Actin-depolymerizing factor 2 251 387 - -
Mch10g0153 387 Pfam Cofilin/tropomyosin-type actin-binding protein 264 384 IPR002108 GO:0003779(InterPro)
Mch10g0153 387 SMART c2hcfinal6 180 196 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 SMART c2hcfinal6 126 142 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 SMART c2hcfinal6 75 91 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 SMART c2hcfinal6 100 116 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 SMART c2hcfinal6 153 169 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 Pfam Zinc knuckle 126 142 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 Pfam Zinc knuckle 154 169 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch10g0153 387 SMART adf_2 262 387 IPR002108 GO:0003779(InterPro)
Mch10g0153 387 ProSiteProfiles Zinc finger CCHC-type profile. 154 169 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0153 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0153 Mch-Chr10:941772 Mch1g0741 Mch-Chr1:11248908 3.36E-70 dispersed
Mch10g0153 Mch-Chr10:941772 Mch5g0381 Mch-Chr5:2595314 1.40E-72 wgd
Mch10g0153 Mch-Chr10:941772 Mch6g2457 Mch-Chr6:26500150 5.03E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31