Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0163 ATGAATTTTTGCAGTGCAGGTGTCATGGGGAAGCAGAAGCAACAGGTGATTTCTCGATTCTTTGCGCCAAAACCCAAGTCCCCATCCTCTTCCTCTTCATCGCCGCCGTCAATTCCGGCTCCTCAACCGTTTTCACCCCCAAAGATATCGGCAACAGTCACTTTCTCTCCTTCCAAACGCCTCCTCTCTTCTGCACTCGCCTCCCAATCGACACCACCCAAATCCTCAAAACGCCCAAAACTCTCCCCCCATACCCAAAACCCTGTTTCTCCCCTGCCCAATCCCTCACTTCACAAAAGATTCCTCCAGAAGTTCCTCGAACCCACCGAAAATACTCTACAACCTTCTAATCCAAACCCCAAACCACCGCCGGGGGGTGATCCCAAATACACCCCTTTGGAGCTACAAGTTGTGGAACTGAAAAAGAGACACCCTGATGTTCTTTTGATGGTAGAAGTTGGTTACAGGTACAGATTCTTCGGGGAAGATGCCGAAATAGCGGCTAAAGTGTTGGGTATTTATGCCCACTTAGATCATAATTTCATGACTGCGAGTATACCAACGTTTAGGTTGAATGTACATGTGAGGAGGCTGGTGAGCGCAGGGTATAAGGTGGGTGTAGTGAAGCAAACCGAAACTGCTGCAATTAAGGCGCACGGATCGAACAAATTAGGCCCCTTTTGCAGAGGATTGTCGGCATTGTATACTAAGGCAACACTTGAGGCGGCCCAGAATTTAGGGGGAGGTGAAGAGGGGTGTGGGGGAGAGAGTAACTACTTGTTCTGTGTGGTTGAAAAGGGTATGTTGGTGGAAAATTTGGACTGTAGAATAGAAAATGGGGTTGATGTGAAAATTGGGATGGTTGGAATTGAGATATCAACTGGGGATGTTATTTATGAGGAATATAGTGATAACTTTATGAGAAGTGGGCTTGAATCAATGCTTTTGAGCTTGTCTCCTGCTGAGTTACTTGTTGGGGATCCCATATCAAAGCTAACAGAGAAGTTATTACTAGGTTATGCTGGACCTGCCTCAAATGTTCGTGTGGAGCATGTTTCACGAGATTGCTTCAAAGATGGCAGTGCACTAGCTGAAGTGATGTCTTTATATGAAAACATTTCCCAAGATAACTTAGCAGATCATCACAACCCGGATACAGGATTTATTGAACAAAAGACTGATCACTTGGCTATTAAGGAAATAATGAACTTGCCAGATTTAGCTCTTCAAGCATTGGCCTTGACCATTCGTCATTTAAAGCAATTTGGTTTAGAAAGAATTGTGTCGTTGGGGTCTTCTTTCAGGCCATTCTCATGCAAAGTGGAAATGTCTCTTTCAGGCAATACACTTAAACAACTTGAGGTTCTGAAGAATAATGATGATGGTTCTGAAACTGGCTCCTTACTACAGTCCATGAATCATACTCTTACTATATTCGGTTCAAGGCTTTTTCGGCAATGGATAACACATCCTTTATGTGATAGAGACATGATAATTGCTCGTCAAGAGGCCGTCTCTGAAATTGCTGCTTCTATGGCATCTTCAAAAGTATCACAAAACATCATAGAGTTAGATGAAGCAGATTCTGATGTGATGGTCATTGAACCAGAATTGAATTATGTACTTTCTTCAGTGTTAACAACTTTGGGAAGGACACCAGATATTCAGCGAGGTATAACAAGAATCTTTCACCGAACTGCAACCCCATCAGAGTTCATCGCAGTTGTTCAAGCTGTTTTATTTGCTGGAAAACAGCTTCAGAAGTTTAACATCGATGAAGAGGATGACAATTATTCCAGTGCAAGTATGATTGGATCCAAGCTCCTAAGAAAGCTGATTTTATCTGCCTCTTCCTCTGGTTTAATTAACACTGGTGCAAAACTTTTGTCAACGATCAGCAAAGAAGCTGCAGATCAAGGGGACCTACCAAACCTTATGATCATTAATAATAATGACCAATTTCCCAAGGTTGGTAGAGCTCGAAAGGAGGTTCAATCTGTGAGAGAGAAATTGGATTCTCTGATCACCTTATACCGCAAGCAGCTTGGAATGCGGAAGTTGGAGTTTGTTAGCGTTTTGGGAACTACGCATTTGATTGAGTTGGCCTCAGATGTGAAGGTACCTTCAAATTGGGTTAAGGTCAATAGTACCAAGAAAACCATAAGGTATCACCCACCTGCAGTGTTGAGTGCATTAGACGAGCTATCCCTGGTGAATGAGGAGCTCATGGTGGCATCTCGTGATGCTTGGGATGTCTTTCTAAGCGGGTTCAGTAGCTATTATGCAGAGTTTCAAGCTGCTGTTCAAGCGTTGGCTTCCATAGACTGTCTGTATTCGTTGGCAATTCTCTCAAGAAATATGAATTATGTTCGTCCAGAGTTTGTGCATGACGATGAACCTGGTCAGATATTTATCCGTTCTGGACGCCATCCGGTTTTGGAGAGTACATTAGGAGGGAATTTTGTGCCGAACGACACAAATATGAATGTGAATGGAGAGCATTGTGAAATAGTTACAGGACCAAACATGGGAGGGAAAAGTTGCTACATTCGACAAGTGGCTCTCATTGCTCTGATGGCTCAGGTTGGTTCCTTCGTACCAGCATTGTCTGCAAAACTCCGCGTCCTTGATGCTATATACACTCGAATGGGTGCTTCTGACACTATTCAACTTGGAAGAAGCACCTTCCTAGAAGAAATGACCGAAACTTCACACATACTTCAACATTCCACCTCACGTTCCCTGGTTATAATCGACGAGCTTGGTAGAGGTACTAGTACCCACGACGGCCTTGCCATTGCTTATGCCGCGTTGCATAATCTGCTTAAATACAAAAAATGTTTGCTCCTATTTGTCACACACTATCCCAAAGTTGCTGATATTGTGAAGGAATTTCCACGATCTGTGGGGGTATACCATGTCTCCTACCTTACTTCACACCAAAATCCAACTTTATCGCCCCTAAAATCTGATCACCAAGATGTTACTTATTTGTATAAACTGGTTCCTGGTGCTGCGGAAAGCAGTTTCGGCTTCAAGGTTGCCCAACTTGCACAGATACCTTTATCATGCATTGAACGGGCTACAAAAATGGGGGTCTGCTTACAAGCATTAGAAACCAGAAGAGCACAACGAAAGTCCAAAGAAGAGCAGCCTTCGCAAGAAACATCAGGCAAGAGGTTGGAATTCTTTCTTCGAGATGCCGGTGAGTCAGAAGATGCGTATGAGGAATTCTTTCTGTCCTTGAAAGCTTTAATATGTGCCGCTGATGATATTGAACAAAGTTGCCAACAATTGAACCGAGCTAGAAGCATGGCCATGGACTTGTTAGGAAGGAAGTTGCATTCTTAA 3351 43.51 MNFCSAGVMGKQKQQVISRFFAPKPKSPSSSSSSPPSIPAPQPFSPPKISATVTFSPSKRLLSSALASQSTPPKSSKRPKLSPHTQNPVSPLPNPSLHKRFLQKFLEPTENTLQPSNPNPKPPPGGDPKYTPLELQVVELKKRHPDVLLMVEVGYRYRFFGEDAEIAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAQNLGGGEEGCGGESNYLFCVVEKGMLVENLDCRIENGVDVKIGMVGIEISTGDVIYEEYSDNFMRSGLESMLLSLSPAELLVGDPISKLTEKLLLGYAGPASNVRVEHVSRDCFKDGSALAEVMSLYENISQDNLADHHNPDTGFIEQKTDHLAIKEIMNLPDLALQALALTIRHLKQFGLERIVSLGSSFRPFSCKVEMSLSGNTLKQLEVLKNNDDGSETGSLLQSMNHTLTIFGSRLFRQWITHPLCDRDMIIARQEAVSEIAASMASSKVSQNIIELDEADSDVMVIEPELNYVLSSVLTTLGRTPDIQRGITRIFHRTATPSEFIAVVQAVLFAGKQLQKFNIDEEDDNYSSASMIGSKLLRKLILSASSSGLINTGAKLLSTISKEAADQGDLPNLMIINNNDQFPKVGRARKEVQSVREKLDSLITLYRKQLGMRKLEFVSVLGTTHLIELASDVKVPSNWVKVNSTKKTIRYHPPAVLSALDELSLVNEELMVASRDAWDVFLSGFSSYYAEFQAAVQALASIDCLYSLAILSRNMNYVRPEFVHDDEPGQIFIRSGRHPVLESTLGGNFVPNDTNMNVNGEHCEIVTGPNMGGKSCYIRQVALIALMAQVGSFVPALSAKLRVLDAIYTRMGASDTIQLGRSTFLEEMTETSHILQHSTSRSLVIIDELGRGTSTHDGLAIAYAALHNLLKYKKCLLLFVTHYPKVADIVKEFPRSVGVYHVSYLTSHQNPTLSPLKSDHQDVTYLYKLVPGAAESSFGFKVAQLAQIPLSCIERATKMGVCLQALETRRAQRKSKEEQPSQETSGKRLEFFLRDAGESEDAYEEFFLSLKALICAADDIEQSCQQLNRARSMAMDLLGRKLHS 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 982798 989569 + MC10g0136 Mch10g0163 677256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0163 1116 SUPERFAMILY DNA repair protein MutS, domain II 256 379 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 MobiDBLite consensus disorder prediction 47 93 - -
Mch10g0163 1116 Pfam MutS domain III 448 781 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 SMART DNAend 463 816 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 SMART mutATP5 833 1033 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 Gene3D MutS, connector domain 254 442 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 ProSitePatterns DNA mismatch repair proteins mutS family signature. 914 930 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 FunFam DNA mismatch repair protein Msh3 630 757 - -
Mch10g0163 1116 Pfam MutS domain I 131 241 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 FunFam DNA mismatch repair protein MSH3 789 1062 - -
Mch10g0163 1116 MobiDBLite consensus disorder prediction 29 46 - -
Mch10g0163 1116 MobiDBLite consensus disorder prediction 109 131 - -
Mch10g0163 1116 Gene3D DNA repair protein MutS, domain I 126 247 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 Gene3D - 630 757 - -
Mch10g0163 1116 SUPERFAMILY DNA repair protein MutS, domain III 448 788 IPR036187 -
Mch10g0163 1116 FunFam DNA mismatch repair protein 254 440 - -
Mch10g0163 1116 FunFam DNA mismatch repair protein 125 250 - -
Mch10g0163 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1030 IPR027417 -
Mch10g0163 1116 MobiDBLite consensus disorder prediction 19 95 - -
Mch10g0163 1116 Gene3D - 789 1069 IPR027417 -
Mch10g0163 1116 Coils Coil 1082 1102 - -
Mch10g0163 1116 PIRSF Msh6 123 1097 IPR017261 GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 MobiDBLite consensus disorder prediction 115 129 - -
Mch10g0163 1116 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 134 1059 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(PANTHER)|GO:0006298(InterPro)|GO:0006312(PANTHER)|GO:0030983(InterPro)|GO:0140664(InterPro)
Mch10g0163 1116 Pfam MutS domain V 837 1031 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mch10g0163 1116 Gene3D - 445 781 - -
Mch10g0163 1116 SUPERFAMILY DNA repair protein MutS, domain I 126 239 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0163 K08736 - - csv:101214720 1674.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0163 Mch-Chr10:982798 Mch9g0663 Mch-Chr9:4978477 2.04E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36