Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0164 ATGCATCGATCTCTCATGTTGGATGGTTCAGCTTCAAAATATGGTTCAATTCCTGGCATCAAACTGTCAACTTATAGACGCCGCTTGAACAATGGAAGTGAGCTGCAACAAAGACAGGTTGCTCAAAATGACGCAAATTCGCAGCAAATACCCTCACTGAAAAGGAACAAGGGTTCTGAGTTTTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGACTGGCCCTTGGTATCCCCTGTCTAGATGGGATTGAGGAAGCTGAAGCACAATGTGCATTACTAAATTCAGAATCATTATGTGATGGATGTTTTACTTCAGATTCAGATGTTTTCCTTTTTGGTGCTAGGACAGTGTATAGGGATATCTGCCTTGGAGACGGCGGTCATGTAGTTTGTTATGAAATGGCTGACATTGAAAGACAACTGGGATTTGGAAGAAACTCAATGGTTACTTTGGCCCTACTTCTTGGCAGTGACTACTCGCAAGGAGTTTATGGCCTGGGTCGTGAATCTGCTTGTCAGATTGTTAAAGCTGTAGGAGATGGTGCTGTCCTTCAAAAAATTGCATCTGAGGGACTGTCTTTCACAAAGAAGGGGAAAAATTCCAAGAAGCAAGGACTTTCTAAGTCTGGAGATGGACAGTGTCTGCATAAATGTGATCACTTTTTGAAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCGGCTGATTCTGATGCTGTGACTAGGGTACTTGTTCAGCATCCTTTTCAACGCATCAAACTTCAGCAGATATGTGCTGAGCTTTTTACATGGCCTCCTGAGAAAACAGATGAGTACATTCTTCCAAAGATTGCGGAAAGAGACCTACGACGATTTGCTAATCTTCGTTCTAACACATCAGCACTCGGGTTCAACATTCCACTCCAAGAGATACCAGCAAATTGTCCTGTTTCTGGAATTGTCAAGCATAGAAAAGTCCAGGGCAGCGACTGCTTCGAGGTCTCTTGGAAAGATTTAAATGGACTTGATTCATCTATTGTACCAGCGGATCTCTTGCAGAGTGCCTGTCCCGAGATGATTGTAGAATTTGAAGAGCAAAAAGCTCAAGGGATGAAACAAAATAGGCGCAAAACTAAAACAAAGAAGTCAGAGGCTGCTGTGGCTGAAATTGACAAAAGACTCCAAACTCTCTTGCTTCAGATCGAATCCGAAAGCAGGGCAGTTCATAGCCTCTCCCTCTCCCATACTCCAATAGTTTCGGAGAGCAGTACTTCTGCTACTGGTGTTGATGAAATGAACCAAGAGGATTTTCTTGATGTTGAACCAACCATCATTGATCGTACTCGTAGCACAGAGAGGATTGAGGTCATTGATCTCTTAAGCCCTTCACCTGCAATTCAAACCAGCAAAGTTTCAAAATTTCAACAGGAAAACAGTGAGAAGATTGATGTAATTGATTTGAGCGATGCAGAGAGTGATCGGTCACCTGAACATGAGAGGAAGGCGAGAGAATTGAGAGCATTCCTTGTTTCTTTGAGGAGTAAATGA 1530 42.61 MHRSLMLDGSASKYGSIPGIKLSTYRRRLNNGSELQQRQVAQNDANSQQIPSLKRNKGSEFSLMIKEAKALGLALGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTVYRDICLGDGGHVVCYEMADIERQLGFGRNSMVTLALLLGSDYSQGVYGLGRESACQIVKAVGDGAVLQKIASEGLSFTKKGKNSKKQGLSKSGDGQCLHKCDHFLKVIDAYLKPKCHSADSDAVTRVLVQHPFQRIKLQQICAELFTWPPEKTDEYILPKIAERDLRRFANLRSNTSALGFNIPLQEIPANCPVSGIVKHRKVQGSDCFEVSWKDLNGLDSSIVPADLLQSACPEMIVEFEEQKAQGMKQNRRKTKTKKSEAAVAEIDKRLQTLLLQIESESRAVHSLSLSHTPIVSESSTSATGVDEMNQEDFLDVEPTIIDRTRSTERIEVIDLLSPSPAIQTSKVSKFQQENSEKIDVIDLSDAESDRSPEHERKARELRAFLVSLRSK 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 989034 992331 - MC10g_new0028 Mch10g0164 677257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0164 509 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 15 463 IPR006084 GO:0017108(PANTHER)
Mch10g0164 509 Pfam XPG I-region 76 158 IPR006086 GO:0004518(InterPro)
Mch10g0164 509 CDD H3TH_XPG-like 146 189 - -
Mch10g0164 509 SMART xpgineu 73 143 IPR006086 GO:0004518(InterPro)
Mch10g0164 509 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 89 IPR006084 -
Mch10g0164 509 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 93 113 IPR006084 -
Mch10g0164 509 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 163 IPR006084 -
Mch10g0164 509 SUPERFAMILY Chromo domain-like 311 362 IPR016197 -
Mch10g0164 509 Gene3D - 308 376 - -
Mch10g0164 509 Gene3D - 144 203 - -
Mch10g0164 509 CDD CD_CSD 311 359 - -
Mch10g0164 509 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 143 290 IPR036279 -
Mch10g0164 509 FunFam Flap endonuclease GEN-like 1 143 201 - -
Mch10g0164 509 Gene3D - 14 142 - -
Mch10g0164 509 Coils Coil 355 375 - -
Mch10g0164 509 SUPERFAMILY PIN domain-like 17 158 IPR029060 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0164 K15338 - - csv:101214962 762.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0164 Mch-Chr10:989034 Mch8g1543 Mch-Chr8:12021483 4.14E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35