Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0172 ATGGATGGTTATGGCGAAGTGTGTCTGCTTGGAGACAGCTTTGATCCGAGTGGAGTTGTGAGGTTAAGGGAAGATGAATATGATAGCAGATCAGGGAGCGATAACATCGATGGTGCCGTATCTGGGGATGATCAAGATGCTAATGATGAACAACCGCCAAGAAAGAAGAAGTATCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGAATTTCTTCAAGGAATGTCCACATCCTGATGACAAACAAAGAAGCGAGCTCAGTAGGAGGCTTGGCTTGGAGACAAAGCAAGTAAAGTTTTGGTTTCAAAATCGCCGAACGCAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGAGCTGAGAATAGTGTGATGAAGGATGCTATTCAAAACCCAACGTGCAATACATGCGGTGGCCCTTCAATGCCCGTTCATCTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGGGATGAACTGCACCGGTTATATTCTGTCACGAACAAGTTCTTGGGCTGGCCGGTCTTACCCTTTGTCAGTCATGGCTCTACACCAAGCTCTGACTCTTGCTTGGAACTTTCTGTAGGAAGAAACGGACTCGGAAGTTTGAGTACCATCAACGATTCTATCCCTATGGGGCTTAACTTGGGAGACGGACTTTTCAGTGCTGGTCCTATGGTGCCTATCACTAAGCCTGGAATTGGCATGCCAGGCAATGATACACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCAATGAATGAATTGGTTAAGATGGCTCAAATGGATGGTCCCCTTTGGATCAAAAGTCGGGATGGCGGTGGCAGAGAGACACTGAACCTTGACGAATATTCAAGGACATTTCCTTCTTCGGCTCGCATGAAGCATAGAAATTGGACAACAGAGGCTACCAGAGATAATACTATGCTCATCATCAACAGCTTGGCACTCGTTGAGACATTGATGGATGCAAATCGATGGGCAGAGATGTTTCCTTGCTTGATTGCTAGAGCTACCACAGTTGATGTGATATCAAGTGGCATGGGCGGAACTAGGAATGGTGCATTACAAGTGATACATGCCGAACTTCGAGTGCTTTCCCCATTGGTTCCTGTACGGACACTGAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCATCGACTTTAGTGGAGAAGGTTCCGATTCACACTCATTTTTCAGTTGCAGGAGGCTTCCTTCAGGCTGTGTCGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTTGAGCATACGGAATATGATGAGACTGTTATGCACCAACTCTACCGCCGGTTAATTAGTTCGGGCATCGGCTTTGGGGCACAACGGTGGCTTGCTACCCTCCAAAGGCAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCATACTGAAGATTCTGCAGGAATATCACCATGCGGTAGACGAAGTATGCTGAAACTATCACAGCGTATGGTTGACAACTTCTGTTCTGGGATCTGTACTTCAACTTTGCACAAGTGGGACAAACTTGTTGTTGGTAATATAAGTGAAGATGTGAAGGTGATGGCTAGAAAGAGCATTGATGATCCCGGTGAGCCACCAGGTATCGTGTTGAGTGCTTCAACTTCTGTTTGGATGCCAGTAGCCCAGCAGAGGTTGTTTGCATTCTTGCAAAACGAGCATTTACGGAGCGAGTGGGACATTTTATCCAATGGCAGGCCAATGCTAGAGATGCTTCACATCTCAAAGGGCCAGGGACTGGATAACCGTGTTTCTCTTCTACGTGCCAATCCCATGAATGCTAATGAGAGCACCATGCTTATATTGCAAGAGACTTGGACTGACATATCAGGCTCACTGGTTGTTTATGCTCCGGTCGACACAGCCTCGGTTAATTTGGTGATGCGCGGAGGAGATTCTACTTATGTGTCACTACTACCATCAGGATTCGCAATTCTCCCTGACGGTCTATCCAGCTATGCTTGTACAAACAACGGCAAAGATGCTTCGGTCACTTCGGACATCAAAATTGGCCATTCCGGTGGATGTCTGCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACAGCTAAACTCACCGTCGAGTCGGTTGAGACAGTTAACAATCTCATTTCTTGCACAATCCAAAAGATCAAAACTTCCCTTGAAGTATCTTAA 2274 45.87 MDGYGEVCLLGDSFDPSGVVRLREDEYDSRSGSDNIDGAVSGDDQDANDEQPPRKKKYHRHTPHQIQELENFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAIQNPTCNTCGGPSMPVHLSFEEHQLRIENARLRDELHRLYSVTNKFLGWPVLPFVSHGSTPSSDSCLELSVGRNGLGSLSTINDSIPMGLNLGDGLFSAGPMVPITKPGIGMPGNDTPLERTIYVDLALAAMNELVKMAQMDGPLWIKSRDGGGRETLNLDEYSRTFPSSARMKHRNWTTEATRDNTMLIINSLALVETLMDANRWAEMFPCLIARATTVDVISSGMGGTRNGALQVIHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIDFSGEGSDSHSFFSCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVMHQLYRRLISSGIGFGAQRWLATLQRQCDCLAILMSSTIHTEDSAGISPCGRRSMLKLSQRMVDNFCSGICTSTLHKWDKLVVGNISEDVKVMARKSIDDPGEPPGIVLSASTSVWMPVAQQRLFAFLQNEHLRSEWDILSNGRPMLEMLHISKGQGLDNRVSLLRANPMNANESTMLILQETWTDISGSLVVYAPVDTASVNLVMRGGDSTYVSLLPSGFAILPDGLSSYACTNNGKDASVTSDIKIGHSGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTSLEVS 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1029677 1035369 - MC10g_new0030 Mch10g0172 677265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0172 757 SMART START_1 264 489 IPR002913 GO:0008289(InterPro)
Mch10g0172 757 Coils Coil 106 141 - -
Mch10g0172 757 Pfam START domain 265 488 IPR002913 GO:0008289(InterPro)
Mch10g0172 757 SMART HOX_1 54 116 IPR001356 GO:0003677(InterPro)
Mch10g0172 757 SUPERFAMILY Bet v1-like 255 489 - -
Mch10g0172 757 MobiDBLite consensus disorder prediction 23 62 - -
Mch10g0172 757 CDD START_ArGLABRA2_like 264 487 - -
Mch10g0172 757 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch10g0172 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 42 755 IPR042160 -
Mch10g0172 757 FunFam Homeobox-leucine zipper protein GLABRA 2 264 488 - -
Mch10g0172 757 SUPERFAMILY Homeodomain-like 39 112 IPR009057 -
Mch10g0172 757 FunFam Homeobox-leucine zipper protein HDG1 41 128 - -
Mch10g0172 757 CDD homeodomain 55 112 IPR001356 GO:0003677(InterPro)
Mch10g0172 757 Gene3D - 41 128 - -
Mch10g0172 757 SUPERFAMILY Bet v1-like 518 751 - -
Mch10g0172 757 Pfam Homeodomain 55 110 IPR001356 GO:0003677(InterPro)
Mch10g0172 757 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677(InterPro)
Mch10g0172 757 ProSiteProfiles START domain profile. 255 492 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0172 Mch-Chr10:1029677 Mch4g0233 Mch-Chr4:1496817 1.82E-237 dispersed
Mch10g0172 Mch-Chr10:1029677 Mch5g0361 Mch-Chr5:2472769 7.28E-257 wgd
Mch10g0172 Mch-Chr10:1029677 Mch7g0709 Mch-Chr7:11725418 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42413 PF01852 START 1.50E-48 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0172 K09338 - csv:101218216 1332.39