Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0179 ATGGCATCTTCTCGTCTGGCTGGAGGATTAGCACAGTCTTCATCAAGTTCCGGGATTTTCTACCAAGGAGAAGGGCAGTCACCAGCTATTGTTAGTTCTCACTTGAGCCAATCATTTGCAAATTCATCAAATTCAATTCCAGGAACTGGATGTTCTGATTTTGGTCCAGTTTCCGGAGACATGAATAATGCAGTCTTAAATAGTGTTGCAAATTCAGGACCAAGTGTTGGTGCAAGTTCACTAGTTACGGATGCGAACTCTGCCCTTTCAGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCATACATGCGCTTGCCTGCATCGCCTATGTCATTCAATTCAAATAACATTAGTGTGTCAGGGTCCTCAGTTATGGATGGATCCTGCGTAGTGCAGCAAAATCCTCAACAGGACCAAAATATCCAACACGTGCAGCAACAGGCACAGCATGCCACATCATTACCAACATCGCAAATGGGCCAAGTATCACTTCCCATGGGTGCAAAACTCCAGGGATCTTTCATTCCAGATCCAAATAATTTTTCTCAGGTGCAGAAGAAACCACGATTGGATATAAAGCAGGAAGATGTGCTGCAACAGCAAGTTTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCAGTCACAAAACCGTAACACACAGTTACAAGCTTTATTTCAACATCAACAAAGAATGCGGCAGCAGCAAATTTTGTCTCTGCCCCCATTCCAGAGAGCTCAGTTGCAGCAGCAGCATCAGCAGCAGCAAATACAGTTGAGGCAGCAATTGCAACAACAGCAGGCAATGCAGCAAGTATCACCCATGAAGCGCCCATATGACGGTGGTGGTGTTTGTGCTCGTCGGCTCATGCAATATCTATATCATCAGCGGCAAAGACCTCAGGAGAATAGTATTGCTTACTGGAGAAAGTTTGTAGCAGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGCTTGTCATTGTATGAGAATGTTGGCCACCATGCTCTTGGTGTGTTTCCCCAGGCAGCCATGGATGCATGGCAGTGCGACATCTGCGGTTCCAAATCAGGAAGGGGCTTTGAGGCCACGTTTGAAGTACTCCCAAGACTCAGTGAGATCAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTAGAGCTTCCTTATGAAAAGAGATTTCCTTCTGGAATTATGATGTTAGAATATGGAAAAGCAATTCAAGAGAGCGTGTATGAGCAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGCATCATATTCACACAAGACTTAAAGATCTTGTCTTGGGAATTCTGTGCAAGGCGCCATGAAGAACTTCTTCCACGTAGGTTGGTTGCACCTCAGGTAAATCAGCTGGTACAGGTTGCCCAGAAATGCCAAAGCACAATTGCTGAAAGTGGGCCTGATGGTGTTTCTCAGAAAGATTTGCAGACAAATAGCAATATGGTACTGACGGCTGGCCGTCAGCTTGCTAAGAGTCTGGAGTTGCAGTTGCTGAATGATTTGGGTTTCTCTAAAAGATACGTGAGGTGTTTGCAGATATCAGAGGTTGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGCGATCAAAAAGTTGGGCCTATTGAGGGCTTGAAAAATTACCCCCGACATGCGACTGCAGCCAAGCTCCAGATGCAAAAAATGCAGGAGATGGAGCAGCTAGCCAGTATTCAAGGTCTTCCCACAGATCGCAACACAATTAATAAGTTGATGGCAATGCATCCTGAACTTGATAACCATGGGATGAACAACCATCAAATGATCGGTCGTGGAGGTTTGAGTGGGTCGGCACAAGCTGCTTTGGCACTGTCTACATACCAGAATATTCTCATGAGACAGAACTCTATGAACTCGAACCCCAGCCCACATCAACAGGAGGCCTCATCTTCCTATAATAACTCCAGCTATAATCCATCCCCTACACTACAGGGGACTGCATCTTTGATGCCTGGATCCATGCAGAACTCTTCTGTCGGTGGCTTTTCAAGCGTCCAGCAACCCTTGCAAAAGCAATCACAGCAGCTGCAACAGCATCCACCAACTGCTGGCTCCTTGGTCCAACAAAATCATCCTCAGACGGTCCAAGGCAACCAGGCCTTAGAACAACAGATGATCCAGCAACTACTGCAGATGTCAAGTAACAGTAAGAGTGGTGGTGCACAACAGCAACCCCTGGCTGGACCAAATGCAAATAGAAGTTTGGCAAGAAGGGGAATGGGTTTTGTTGGAAATACCTCGGTTGCAGCTGTGACATCTGCAAATCTGTCTGGGAGCAGTGTCCCTGGCCCAAGTAGAAGCAATAGTTTCAAAGCTGCTTCAAACAGCGAGTCCTCCGCTGGTAACAGTGGATTCAATCAAAAGGGATCTGATTTGCCGCATGATCTTCATCTGCCAGAGGGTCTGGTTGAAGATATAGGCCAAGATTTCACAGAAAACGGGTTTATTAACAATGACCTGGATGATTTGGGTTATGTCTGGAAGGCT 2544 45.95 MASSRLAGGLAQSSSSSGIFYQGEGQSPAIVSSHLSQSFANSSNSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVMDGSCVVQQNPQQDQNIQHVQQQAQHATSLPTSQMGQVSLPMGAKLQGSFIPDPNNFSQVQKKPRLDIKQEDVLQQQVLQQLFQRQDSMQSQNRNTQLQALFQHQQRMRQQQILSLPPFQRAQLQQQHQQQQIQLRQQLQQQQAMQQVSPMKRPYDGGGVCARRLMQYLYHQRQRPQENSIAYWRKFVAEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLELPYEKRFPSGIMMLEYGKAIQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAESGPDGVSQKDLQTNSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLASIQGLPTDRNTINKLMAMHPELDNHGMNNHQMIGRGGLSGSAQAALALSTYQNILMRQNSMNSNPSPHQQEASSSYNNSSYNPSPTLQGTASLMPGSMQNSSVGGFSSVQQPLQKQSQQLQQHPPTAGSLVQQNHPQTVQGNQALEQQMIQQLLQMSSNSKSGGAQQQPLAGPNANRSLARRGMGFVGNTSVAAVTSANLSGSSVPGPSRSNSFKAASNSESSAGNSGFNQKGSDLPHDLHLPEGLVEDIGQDFTENGFINNDLDDLGYVWKA 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1067208 1075128 - MC10g0148 Mch10g0179 677272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0179 848 MobiDBLite consensus disorder prediction 774 808 - -
Mch10g0179 848 MobiDBLite consensus disorder prediction 732 749 - -
Mch10g0179 848 MobiDBLite consensus disorder prediction 774 814 - -
Mch10g0179 848 Coils Coil 249 273 - -
Mch10g0179 848 MobiDBLite consensus disorder prediction 633 707 - -
Mch10g0179 848 PANTHER LIM DOMAIN-BINDING PROTEIN 15 838 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Mch10g0179 848 MobiDBLite consensus disorder prediction 732 753 - -
Mch10g0179 848 Pfam LIM-domain binding protein 292 552 IPR029005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0179 Mch-Chr10:1067208 Mch4g1830 Mch-Chr4:21153202 5.21E-101 dispersed
Mch11g1379 Mch-Chr11:9841805 Mch10g0179 Mch-Chr10:1067208 3.76E-107 transposed
Mch10g0179 Mch-Chr10:1067208 Mch6g2529 Mch-Chr6:27197826 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0179 - - - 0.0