Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0186 GTTTCTACCCCCAATTCCACATCTTCGCAACCGCAACCGCAACCGCCTCGCCACTCCAAGTATCGCGGCATTCGCAGCCGCAGCGGCAAATGGGTGTCCGAAATTCGCGAGCCACGCAAAACCACTCGCATTTGGCTCGGCACCTACCCCACCCCCGAGATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCGCTCTCAAGGGCCCCCAAGCCACCCTCAATTTCCCCAACTCTATCTTCTCCTATCCCATCCCCCCCTCCACTTCCCCTACCGATATCCGCGCCGCCGCCGCCATTGCCGCCGCCGCCGCCTCCAAATCCCAATCTCCTCCTCCGCTCCCGCTGGACGATGGTCCTGGGCCCGGGCCCTCCGATGCGCCGCCCACCGGAGACTTTGTCGACGAGGAAGCGCTACTCAACATGCCCAATTTGTTGGTGGATATGGCGGAGGGAATGCTGGTAAGTCCGCCGCGGATCAACTCGCCCTCCTCCGATCACTCTCCCACTAACTCTCATGGGGATGATGGATTATGGAGTTACTCC 543 62.62 VSTPNSTSSQPQPQPPRHSKYRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPQATLNFPNSIFSYPIPPSTSPTDIRAAAAIAAAAASKSQSPPPLPLDDGPGPGPSDAPPTGDFVDEEALLNMPNLLVDMAEGMLVSPPRINSPSSDHSPTNSHGDDGLWSYS 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1128708 1129250 + MC10g0155 Mch10g0186 677279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0186 181 MobiDBLite consensus disorder prediction 112 126 - -
Mch10g0186 181 MobiDBLite consensus disorder prediction 1 31 - -
Mch10g0186 181 CDD AP2 19 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0186 181 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0186 181 FunFam Ethylene-responsive transcription factor 2 19 77 - -
Mch10g0186 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 180 IPR045277 GO:0003700(InterPro)
Mch10g0186 181 MobiDBLite consensus disorder prediction 157 181 - -
Mch10g0186 181 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677(InterPro)
Mch10g0186 181 Pfam AP2 domain 19 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0186 181 MobiDBLite consensus disorder prediction 1 16 - -
Mch10g0186 181 MobiDBLite consensus disorder prediction 100 137 - -
Mch10g0186 181 MobiDBLite consensus disorder prediction 154 181 - -
Mch10g0186 181 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0186 181 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0186 181 ProSiteProfiles AP2/ERF domain profile. 20 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0186 181 SMART rav1_2 20 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0186 Mch-Chr10:1128708 Mch5g1649 Mch-Chr5:17325801 1.13E-43 dispersed
Mch10g0186 Mch-Chr10:1128708 Mch10g0187 Mch-Chr10:1139004 5.75E-31 tandem
Mch10g0186 Mch-Chr10:1128708 Mch6g2707 Mch-Chr6:28712811 5.93E-55 wgd
Mch10g0186 Mch-Chr10:1128708 Mch6g2535 Mch-Chr6:27256264 4.79E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42416 PF00847 AP2 1.60E-11 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0186 - - - 0.0