Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0187 ATGGAACCTTTTCCAAGTTTCTATGAAGAGTACTTGTCGAGCTCTGAGAGTAGCAGTTGCCGCCGGAGAGCGTTGTTTTCCGACGAGGAGGTCATGTTGGCGGCGAGCAATCCGAAGAAGAGGGCCGGGAGGAAGAAATTTAAGGAGACTCGGCATCCGGTGTACAGGGGAGTGAGGAGGAGGAATTCCGGTAAGTGGGTTTGCGAGGTAAGGGAGCCCAATAAGAAGTCTAGGATTTGGCTTGGGACATTTCCAACGGCGGAGATGGCGGCTCGGGCTCACGACGTGGCGGCGATGGCGCTTAGAGGTCGCTCTGCTTGTCTCAATTTCGCCGACTCCGCGTGGCGGCTGCCGCTGCCGGCGTCCCCTGACCCCAGGGGTATTCAGAAAGCGGCAGCCGAGGCGGCGGAGGCATTCCGGCCGGTTGAGTCAGATGGGTCCTCCGTAGACGACCCACGGCAGGAAAATGGGACGGCGGCGGAGACGACGGCGCCCCCGTCGGAAAACGTGTTTTACTACATGGATGAGGAGGCAGTTTTTGGGCTTCCTGGATTGCTGGAGGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACAAGGATTTTTATGATGACATGTCATTATGGAGCTAT 648 57.1 MEPFPSFYEEYLSSSESSSCRRRALFSDEEVMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMALRGRSACLNFADSAWRLPLPASPDPRGIQKAAAEAAEAFRPVESDGSSVDDPRQENGTAAETTAPPSENVFYYMDEEAVFGLPGLLEDMAAGMMLPPPQHFRDDKDFYDDMSLWSY 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1139004 1139651 + MC10g0156 Mch10g0187 677280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0187 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 216 IPR045277 GO:0003700(InterPro)
Mch10g0187 216 MobiDBLite consensus disorder prediction 137 164 - -
Mch10g0187 216 CDD AP2 55 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0187 216 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0187 216 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0187 216 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0187 216 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Mch10g0187 216 Pfam AP2 domain 53 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0187 216 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677(InterPro)
Mch10g0187 216 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0187 216 SMART rav1_2 54 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0187 Mch-Chr10:1139004 Mch6g2535 Mch-Chr6:27256264 1.35E-76 dispersed
Mch10g0186 Mch-Chr10:1128708 Mch10g0187 Mch-Chr10:1139004 5.75E-31 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42417 PF00847 AP2 1.10E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0187 - - - 0.0