Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0200 ATGGTGAGAGGAAAAGTAGAGATGAAACGAATAGAAAATGCGACAAGTCGGCAGGTGACGTTCTCGAAGCGTCGAAATGGGCTGTTGAAGAAGGCTTATGAACTATCTGTGCTCTGTGATGCTCAAATTGCTGTCATCATTTTCTCTCAGAAAGGCCGACTCTACGAGTTTGCAAGCTCTGACATACAGAGGATTGTGGAGCGCTATCGCAAATGTGCAAGAGATGGGAAGAATAATAGCAAGATTGATAAACAGCTCCAATTACAGCTGTTGGGATATGGACTGGATTCTTGTTCTCTTGATGAACTTCAAGAAATTGATGCTCAGCTTCAGCGAAGCTTGTTCCTAATTAGGGCCAGAAAGGCTCAGCTATACAAGGAGCAAATAGAACAACTAAAAGAAAAGGAACGACTTCTTTTAGAAAAGAACGCAAGATTATCTTTAAAGGCCGCAGCTCACGGTGGCGCCGCCGCTCTCGGCTGCCGGAGTAGCCCAAGTTGTGAAGTCGACACCCAATTGTTCATTTAA 528 44.51 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAQIAVIIFSQKGRLYEFASSDIQRIVERYRKCARDGKNNSKIDKQLQLQLLGYGLDSCSLDELQEIDAQLQRSLFLIRARKAQLYKEQIEQLKEKERLLLEKNARLSLKAAAHGGAAALGCRSSPSCEVDTQLFI 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1190205 1195736 + MC10g0169 Mch10g0200 677293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0200 175 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 ProSiteProfiles K-box domain profile. 65 156 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch10g0200 175 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 Coils Coil 122 149 - -
Mch10g0200 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 Pfam K-box region 86 149 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch10g0200 175 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 Gene3D - 14 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0200 175 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 150 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch10g0200 175 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mch10g0200 175 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0200 Mch-Chr10:1190205 Mch7g0741 Mch-Chr7:12030179 9.80E-50 dispersed
Mch10g0200 Mch-Chr10:1190205 Mch10g0203 Mch-Chr10:1214979 4.97E-33 proximal
Mch10g0200 Mch-Chr10:1190205 Mch5g0344 Mch-Chr5:2347536 3.17E-48 wgd
Mch10g0200 Mch-Chr10:1190205 Mch6g2721 Mch-Chr6:28829510 8.17E-52 wgd
Mch10g0200 Mch-Chr10:1190205 Mch7g0724 Mch-Chr7:11860623 2.03E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42419 PF01486 K-box 3.80E-16 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0200 - - - 0.0