Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0203 | ATGGGTAGAGGAAAAGTGGTGCTTGAGAGAATAGAGAACAAAGTGAACCGCCAAGTCACATTCTCAAAGCGCAGAAATGGGTTACTGAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGTAGATGTTGCTCTCATCATCTTCTACAGCCGTGGCAAGCTCTTCGAATTTTCCAGCACTGACATGAACAAGATTCTTGAGAGGTACCACCAGCGATGTTACAGCTCTGGATCCACCAGCAACCTTGATGAGAGTGACGTTCAGATAGAAGAGGTTTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGGGAAGAACTTGAGCCACTGAACCTGAAGGAGTTGCACAATCTTGAGAAACAGTTGGATAAAACTCTTTCACAAGCTAGACAGCGGAAGGCAGAGATAATGCTTCAAAGATTAGCAGAGTTGCGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTGAGCTCAAATCAAAGCTTGAGGAAGGACAACGACGGTTGCAACAAAGTGAAGATGGGCAGGGAGATCCAGAAGAACAAGTACCTAATTACGAAGTGGTAGGAGAAGAACCAAACATGAGCAGCAGGTGCTTTGATGTCCAAGAAGAAGAAGAAGCCAGGGCAGCCATGGCAGGAGGAAGGGAGTAA | 675 | 45.93 | MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVDVALIIFYSRGKLFEFSSTDMNKILERYHQRCYSSGSTSNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSQARQRKAEIMLQRLAELRKMEQDLGDQNTELKSKLEEGQRRLQQSEDGQGDPEEQVPNYEVVGEEPNMSSRCFDVQEEEEARAAMAGGRE | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1214979 | 1219183 | - | MC10g0172 | Mch10g0203 | 677296 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0203 | 224 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | Gene3D | - | 13 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | Coils | Coil | 148 | 182 | - | - | |
Mch10g0203 | 224 | MobiDBLite | consensus disorder prediction | 205 | 224 | - | - | |
Mch10g0203 | 224 | SUPERFAMILY | SRF-like | 2 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | Coils | Coil | 119 | 142 | - | - | |
Mch10g0203 | 224 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch10g0203 | 224 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
Mch10g0203 | 224 | Pfam | K-box region | 89 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch10g0203 | 224 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Mch10g0203 | 224 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 183 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch10g0203 | 224 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch10g0203 | 224 | MobiDBLite | consensus disorder prediction | 171 | 224 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0203 | Mch-Chr10:1214979 | Mch7g0740 | Mch-Chr7:12021991 | 1.37E-54 | dispersed | |
Mch10g0200 | Mch-Chr10:1190205 | Mch10g0203 | Mch-Chr10:1214979 | 4.97E-33 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42420 | PF01486 | K-box | 2.40E-23 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0203 | K09264 | - | csv:101212022 | 325.479 |