Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0203 ATGGGTAGAGGAAAAGTGGTGCTTGAGAGAATAGAGAACAAAGTGAACCGCCAAGTCACATTCTCAAAGCGCAGAAATGGGTTACTGAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGTAGATGTTGCTCTCATCATCTTCTACAGCCGTGGCAAGCTCTTCGAATTTTCCAGCACTGACATGAACAAGATTCTTGAGAGGTACCACCAGCGATGTTACAGCTCTGGATCCACCAGCAACCTTGATGAGAGTGACGTTCAGATAGAAGAGGTTTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGGGAAGAACTTGAGCCACTGAACCTGAAGGAGTTGCACAATCTTGAGAAACAGTTGGATAAAACTCTTTCACAAGCTAGACAGCGGAAGGCAGAGATAATGCTTCAAAGATTAGCAGAGTTGCGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTGAGCTCAAATCAAAGCTTGAGGAAGGACAACGACGGTTGCAACAAAGTGAAGATGGGCAGGGAGATCCAGAAGAACAAGTACCTAATTACGAAGTGGTAGGAGAAGAACCAAACATGAGCAGCAGGTGCTTTGATGTCCAAGAAGAAGAAGAAGCCAGGGCAGCCATGGCAGGAGGAAGGGAGTAA 675 45.93 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVDVALIIFYSRGKLFEFSSTDMNKILERYHQRCYSSGSTSNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSQARQRKAEIMLQRLAELRKMEQDLGDQNTELKSKLEEGQRRLQQSEDGQGDPEEQVPNYEVVGEEPNMSSRCFDVQEEEEARAAMAGGRE 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1214979 1219183 - MC10g0172 Mch10g0203 677296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0203 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 Coils Coil 148 182 - -
Mch10g0203 224 MobiDBLite consensus disorder prediction 205 224 - -
Mch10g0203 224 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 Coils Coil 119 142 - -
Mch10g0203 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch10g0203 224 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mch10g0203 224 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch10g0203 224 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch10g0203 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch10g0203 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0203 224 MobiDBLite consensus disorder prediction 171 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0203 Mch-Chr10:1214979 Mch7g0740 Mch-Chr7:12021991 1.37E-54 dispersed
Mch10g0200 Mch-Chr10:1190205 Mch10g0203 Mch-Chr10:1214979 4.97E-33 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42420 PF01486 K-box 2.40E-23 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0203 K09264 - csv:101212022 325.479