Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0222 ATGGTTTATCGATTCCTTATGGCGAGAAGAGGAGGAGCAATTGGATCTTGGCTTGGTATCGTCGTGCTTTTGATTTCTGCGCCAATTCATGTCTCACCCAGATCGGATAGTGAAATTAGGGAGAGATTTTATGGAAACTTGATTAACTCAACGGCACCCACTTCCGGTGACGGTAGCATTGCCCAAATGTTCGATAAGGTGCTCGAGAAGGAGTTTTCTGATAACGATCTGCCTGAAGGTTCTGGTGGAAGCAGCTTTAATAGCAGCGTTGCTGATCAGGAGGTTGAACTGGAGACAGTAGCTAAAATCACGCATGAGAAAGGCAAGAAAAATGAGAGTCAAAAGACAAATGGGACAAGGGCATTCCAATTGCAGGATGTTTTCTCTCTTGAAAATGAGGACTCTGATGACGTCACAACGTTGATTGATAAAAAAGATAATGTATTTGTGATGTCAAACAAGAAATCAAAGTATCCAGTACTTCAAGTAGATTTGAGATTGATTTCAGACTTGGTGGTGGTTATTGTTTCTGCCGCAGTTGGAGGGATTATATTTTCTTGTTTAGGGCAACCGGTTATTGTGGGCTATCTTCTTGCGGGGTCAATCATTGGACCGGGAGGTCTAAAATTCATCAGTGAGATGGTCCAGGTTGAGACAGTGGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTTTAGGACTGGAGTTTTCCTTGACAAAGTTAAAAGTTGTGGGAGCTGTTGCTGTTTTGGGAGGTTTTCTACAGATCATCATATTTATGCTCTTGTCTGGCATAATTGCGATGTTAAGTGGGGCTAAACTGTCCGAGGGGGTATTTGTTGGTTCATTTCTATCAATGTCGTCGACAGCAGTGGTTGTGAAGTTCTTGGTTGAACGGAATAGTAGTAATACTCTTCATGGTCAAGTTACTATTGGAACACTTATCTTACAGGATTGTGCTGTTGGTTTGCTGTTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTCTTTTAGGAATGATATCTATGGGAAAGTTGCTATTGGTTTTGTCTGTATATCTCATGGCCGCATCTGTTTTGTCATGGTCATTTGTTCCCCGCTTTCTTAAGTTGATGATGCAGCTGTCGTCTCAAACAAATGAGCTGTATCAGCTTGCTGCCGTGGCATTCTGCTTGCTGTCTGCTTGGTGCAGTGATAAGTTGGGTCTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGGTATCTACCACTGAATTCGGGCAACATACTTTAGATCAGGTGGAACCAATCCGTAACTTGTTTGCAGCTTTGTTCCTTTCAAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGATATTTTGCTAGCATCTGTCATGATGGTTGTGTTCGTCAAGACAGCAGTTTCTACCATTGTTGCAAAAGCATTTGGGTACAGTATTAGAACTTCTTTTCAGGTTGGAGTTATGCTTGCTCAAATTGGAGAATTCGCTTTTGTTCTCCTAAGCCGTGCTTCAAATCTTCATCTCATTGGGGGGAAAGTTTATCTGCTGCTTCTTGGAACAACAGCACTTAGTCTGGTGACCACCCCTCTTCTGTTCAAATTGATACCTGCCGTGTTGAATTTAGGGGTTCTCATGCATTGGTTTCCCTCAGAAAACAACATTCAAAACGAGGAGAAAGCATCAATGATCGAAGCACACAACAGAATGTTGTGA 1737 42.26 MVYRFLMARRGGAIGSWLGIVVLLISAPIHVSPRSDSEIRERFYGNLINSTAPTSGDGSIAQMFDKVLEKEFSDNDLPEGSGGSSFNSSVADQEVELETVAKITHEKGKKNESQKTNGTRAFQLQDVFSLENEDSDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAVGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVLGGFLQIIIFMLLSGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLLLGMISMGKLLLVLSVYLMAASVLSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMVSTTEFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMMVVFVKTAVSTIVAKAFGYSIRTSFQVGVMLAQIGEFAFVLLSRASNLHLIGGKVYLLLLGTTALSLVTTPLLFKLIPAVLNLGVLMHWFPSENNIQNEEKASMIEAHNRML 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1366410 1375259 + MC10g0186 Mch10g0222 677315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0222 578 Gene3D - 165 548 IPR038770 -
Mch10g0222 578 Pfam Sodium/hydrogen exchanger family 175 541 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Mch10g0222 578 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 48 573 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0222 K26735 - - csv:101207607 993.416
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0222 Mch-Chr10:1366410 Mch8g0574 Mch-Chr8:4094024 4.26E-231 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g519 . Blo15g00147 . . . Bpe07g00962 . . . . . . . . Sed07g1090 . . Bhi01g01258 Tan01g0338 Cmetu08g0079 . . Mch10g0222 . . . . . . . . . . . . Lsi05g01300 . . Cme06g00928 . . Bda06g00656 . . . . Bma12g01144 . . . . . . . . . . . . . . . . Cla05g00817 Cam05g0900 Cec05g0904 Cco05g0909 Clacu05g0891 Cmu05g0847 Cre05g0933 . Csa03g01643 Chy06g00880 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1894 . 119 523 Antiporters AT5G46110 78.2 3.1e-171 598.2
Mch9g2077 . 32 407 Antiporters AT5G46110 71.3 6.9e-147 517.3
Mch11g1168 . 4 397 Antiporters AT5G54800 74.4 8.7e-160 560.1
Mch10g1237 . 1 396 Antiporters AT5G54800 73.3 2.0e-156 548.9
Mch1g1770 . 30 389 Antiporters AT5G54800 74.4 4.1e-149 524.6
Mch5g0285 . 60 374 Antiporters AT5G54800 53.0 2.0e-87 319.7
Mch3g1442 . 53 417 Antiporters AT3G01550 59.2 1.3e-112 403.3
Mch4g2209 . 1 301 Antiporters AT3G01550 66.6 5.1e-112 401.4
Mch3g1442 . 1 420 Antiporters AT5G33320 73.0 2.8e-156 548.5
Mch4g2209 . 1 301 Antiporters AT5G33320 60.6 6.9e-99 357.8
Mch11g1168 . 20 397 Antiporters AT1G61800 75.5 1.2e-159 559.7
Mch10g1237 . 45 397 Antiporters AT1G61800 79.9 4.6e-159 557.8
Mch1g1770 . 32 385 Antiporters AT1G61800 78.3 1.3e-158 556.2
Mch5g0285 . 80 378 Antiporters AT1G61800 52.8 2.6e-85 312.8
Mch5g0285 . 68 390 Antiporters AT5G17630 83.6 1.4e-150 529.6
Mch11g1168 . 85 397 Antiporters AT5G17630 54.1 1.0e-89 327.4
Mch10g1237 . 98 395 Antiporters AT5G17630 55.8 3.0e-89 325.9
Mch10g1417 . 7 400 Antiporters AT3G13320 77.4 1.2e-165 579.7
Mch2g0453 . 72 448 Antiporters AT3G13320 77.5 3.2e-158 555.1
Mch8g1017 . 58 424 Antiporters AT3G13320 75.0 5.3e-153 537.7
Mch1g0613 . 7 430 Antiporters AT2G38170 69.6 1.2e-158 556.6
Mch5g1936 . 9 428 Antiporters AT2G38170 62.6 3.6e-139 491.9
Mch10g1417 . 27 398 Antiporters AT2G38170 50.5 2.4e-90 329.7
Mch1g0613 . 8 398 Antiporters AT3G51860 71.5 2.4e-148 522.3
Mch5g1936 . 3 396 Antiporters AT3G51860 65.5 2.2e-133 472.6
Mch10g1417 . 27 367 Antiporters AT3G51860 52.5 3.2e-84 309.3
Mch2g0453 . 64 419 Antiporters AT3G51860 50.8 1.0e-82 304.3
Mch1g0613 . 36 426 Antiporters AT5G01490 62.6 9.6e-134 473.8
Mch5g1936 . 29 428 Antiporters AT5G01490 60.2 8.4e-130 460.7
Mch10g1417 . 7 396 Antiporters AT1G55720 74.7 3.7e-154 541.6
Mch2g0453 . 72 448 Antiporters AT1G55720 73.8 1.8e-148 522.7
Mch8g1017 . 58 427 Antiporters AT1G55720 70.9 1.8e-140 496.1
Mch10g1417 . 2 396 Antiporters AT1G55730 77.9 1.3e-167 586.3
Mch2g0453 . 73 448 Antiporters AT1G55730 78.7 1.1e-161 566.6
Mch8g1017 . 58 428 Antiporters AT1G55730 75.0 2.8e-154 542.0
Mch1g0613 . 67 430 Antiporters AT1G55730 51.1 2.5e-94 342.8
Mch6g1633 . 4 535 Antiporters AT5G27150 76.5 4.4e-234 807.4
Mch7g1138 . 22 529 Antiporters AT5G27150 74.8 1.1e-216 749.6
Mch9g0801 . 13 521 Antiporters AT5G27150 68.2 1.9e-197 685.6
Mch9g0802 . 1 539 Antiporters AT5G27150 65.5 4.4e-194 674.5
Mch9g0803 . 18 508 Antiporters AT5G27150 64.3 8.3e-177 617.1
Mch11g1230 . 12 535 Antiporters AT5G27150 58.4 2.3e-166 582.4
Mch6g1633 . 5 535 Antiporters AT3G06370 70.5 2.5e-208 721.8
Mch7g1138 . 22 540 Antiporters AT3G06370 71.2 3.2e-208 721.5
Mch9g0801 . 13 520 Antiporters AT3G06370 66.1 2.5e-184 642.1
Mch9g0802 . 22 541 Antiporters AT3G06370 63.9 2.4e-179 625.5
Mch9g0803 . 15 512 Antiporters AT3G06370 62.5 1.8e-171 599.4
Mch11g1230 . 12 517 Antiporters AT3G06370 58.5 2.8e-159 558.9
Mch11g1230 . 1 529 Antiporters AT5G55470 69.6 1.2e-212 736.1
Mch6g1633 . 18 520 Antiporters AT5G55470 59.0 9.1e-168 587.0
Mch7g1138 . 19 516 Antiporters AT5G55470 58.3 3.8e-166 581.6
Mch9g0801 . 2 509 Antiporters AT5G55470 55.4 1.1e-152 537.0
Mch9g0802 . 1 525 Antiporters AT5G55470 53.6 1.9e-149 526.2
Mch9g0803 . 9 508 Antiporters AT5G55470 53.6 7.5e-146 514.2
Mch6g1633 . 4 537 Antiporters AT3G05030 77.4 3.5e-239 824.3
Mch7g1138 . 22 529 Antiporters AT3G05030 74.9 2.5e-221 765.0
Mch9g0801 . 13 521 Antiporters AT3G05030 67.8 1.6e-199 692.6
Mch9g0802 . 25 542 Antiporters AT3G05030 67.0 1.3e-193 672.9
Mch9g0803 . 18 508 Antiporters AT3G05030 64.1 9.0e-179 623.6
Mch11g1230 . 12 517 Antiporters AT3G05030 59.5 2.3e-166 582.4
Mch8g1149 . 102 668 Antiporters AT1G15460 70.8 2.8e-231 798.1
Mch8g0425 . 99 686 Antiporters AT1G15460 65.3 2.7e-221 765.0
Mch6g2601 . 67 633 Antiporters AT1G15460 68.8 3.5e-221 764.6
Mch8g2109 . 102 645 Antiporters AT1G15460 59.6 1.9e-182 636.0
Mch3g1443 . 166 708 Antiporters AT1G15460 56.8 1.7e-175 612.8
Mch8g2109 . 3 708 Antiporters AT3G06450 70.2 6.6e-294 1006.5
Mch3g1443 . 67 729 Antiporters AT3G06450 71.7 2.7e-279 958.0
Mch8g1149 . 6 601 Antiporters AT3G06450 58.5 8.9e-214 740.3
Mch8g0425 . 3 665 Antiporters AT3G06450 53.8 2.0e-213 739.2
Mch6g2601 . 1 619 Antiporters AT3G06450 54.0 8.4e-196 680.6
Mch8g2109 . 1 715 Antiporters AT2G47160 80.3 0.0e+00 1165.2
Mch3g1443 . 65 745 Antiporters AT2G47160 74.4 1.3e-305 1045.4
Mch8g0425 . 4 665 Antiporters AT2G47160 56.5 4.5e-218 754.6
Mch8g1149 . 7 648 Antiporters AT2G47160 56.8 4.2e-216 748.0
Mch6g2601 . 1 619 Antiporters AT2G47160 56.6 7.8e-202 700.7
Mch8g1149 . 5 668 Antiporters AT1G74810 69.3 1.6e-273 938.7
Mch8g0425 . 4 685 Antiporters AT1G74810 65.8 9.0e-261 896.3
Mch6g2601 . 1 633 Antiporters AT1G74810 68.6 1.1e-253 872.8
Mch8g2109 . 7 645 Antiporters AT1G74810 59.4 4.2e-218 754.6
Mch3g1443 . 71 708 Antiporters AT1G74810 58.2 4.0e-216 748.0
Mch8g2109 . 1 707 Antiporters AT3G62270 82.5 0.0e+00 1169.1
Mch3g1443 . 65 756 Antiporters AT3G62270 76.1 4.1e-309 1057.0
Mch8g0425 . 4 665 Antiporters AT3G62270 57.9 2.2e-222 768.8
Mch8g1149 . 7 648 Antiporters AT3G62270 58.7 4.0e-219 758.1
Mch6g2601 . 1 619 Antiporters AT3G62270 58.4 8.0e-204 707.2
Mch8g0425 . 4 684 Antiporters AT4G32510 68.0 7.3e-271 929.9
Mch8g1149 . 1 665 Antiporters AT4G32510 65.0 6.0e-257 883.6
Mch6g2601 . 1 628 Antiporters AT4G32510 65.2 5.3e-237 817.4
Mch8g2109 . 1 646 Antiporters AT4G32510 55.2 7.9e-209 723.8
Mch3g1443 . 65 714 Antiporters AT4G32510 54.3 1.7e-206 716.1
Mch8g0425 . 4 682 Antiporters AT5G25430 69.3 1.3e-267 919.1
Mch8g1149 . 7 656 Antiporters AT5G25430 66.9 1.1e-250 862.8
Mch6g2601 . 1 627 Antiporters AT5G25430 64.6 1.4e-226 782.7
Mch8g2109 . 7 645 Antiporters AT5G25430 56.1 2.1e-206 715.7
Mch3g1443 . 71 720 Antiporters AT5G25430 54.4 3.6e-201 698.4
Mch4g1486 . 27 1140 Antiporters AT2G01980 66.5 0.0e+00 1382.9
Mch4g1486 . 11 738 Antiporters AT1G14660 65.4 1.9e-272 935.3
Mch8g0574 . 56 583 Antiporters AT5G11800 83.6 4.2e-238 820.8
Mch6g0906 . 147 687 Antiporters AT5G11800 80.3 2.2e-231 798.5
Mch10g0222 . 57 578 Antiporters AT5G11800 67.9 1.4e-185 646.4
Mch10g0222 . 18 576 Antiporters AT5G51710 80.3 2.6e-245 844.7
Mch6g0906 . 150 659 Antiporters AT5G51710 70.9 9.0e-190 660.2
Mch8g0574 . 49 556 Antiporters AT5G51710 69.3 2.1e-186 649.0
Mch6g0906 . 139 683 Antiporters AT2G19600 82.8 2.1e-237 818.5
Mch8g0574 . 42 583 Antiporters AT2G19600 81.8 7.4e-235 810.1
Mch10g0222 . 35 563 Antiporters AT2G19600 68.2 1.1e-182 636.7
Mch10g0480 . 148 563 Antiporters AT1G49810 77.0 3.5e-178 621.3
Mch10g0480 . 1 581 Antiporters AT3G19490 77.1 9.1e-246 846.3
Mch2g0139 . 79 566 Antiporters AT5G12860 89.0 7.6e-250 859.8
Mch10g0348 . 1 570 Antiporters AT5G64280 61.3 8.5e-193 670.2
Mch10g0348 . 1 570 Antiporters AT5G64290 69.4 1.3e-212 736.1
Mch4g0145 . 3 378 Antiporters AT4G28390 83.6 7.4e-180 626.7
Mch9g0549 . 3 389 Antiporters AT4G28390 75.0 5.5e-159 557.4
Mch9g0550 . 44 430 Antiporters AT4G28390 74.7 1.2e-158 556.2
Mch3g1675 . 24 325 Antiporters AT4G28390 64.1 6.9e-109 391.0
Mch9g0550 . 42 432 Antiporters AT3G08580 77.9 2.0e-169 592.0
Mch9g0549 . 1 390 Antiporters AT3G08580 77.6 7.7e-169 590.1
Mch4g0145 . 1 377 Antiporters AT3G08580 73.5 1.5e-151 532.7
Mch3g1675 . 8 325 Antiporters AT3G08580 56.7 2.7e-97 352.4
Mch9g0550 . 42 432 Antiporters AT5G13490 82.5 5.2e-181 630.6
Mch9g0549 . 1 390 Antiporters AT5G13490 81.9 4.4e-180 627.5
Mch4g0145 . 1 377 Antiporters AT5G13490 75.6 1.2e-161 566.2
Mch3g1675 . 8 325 Antiporters AT5G13490 60.8 1.0e-107 387.1
Mch3g1675 . 19 320 Antiporters AT5G17400 79.5 5.1e-139 490.7
Mch4g0145 . 78 367 Antiporters AT5G17400 63.8 3.2e-109 391.7
Mch9g0549 . 90 381 Antiporters AT5G17400 63.4 3.6e-108 388.3
Mch9g0550 . 131 422 Antiporters AT5G17400 63.4 3.6e-108 388.3
Mch6g2071 . 3 544 Antiporters AT1G08960 65.6 5.0e-185 644.4
Mch8g2180 . 32 559 Antiporters AT2G47600 69.9 4.7e-212 734.2
Mch9g0346 . 1 294 Antiporters AT1G79900 68.1 5.0e-115 411.0
Mch8g1173 . 10 312 Antiporters AT1G79900 66.8 1.6e-113 406.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000564 3 3 6 4 5 3 5 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 3 3 3 10 2 108