Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0229 ATGGAGGAGAAAGTTACCGGAGTTTCTGGGTTCGCAGTAACGAATGATGAAGCCCTAGGGAGCTTCCAGTTAGCCCCAACAACAGAAACCCTAAAAGCAACCGACGAGCCTAAAGTGATGGCGAGTGCCGGGGCTGCTACACCACCAGCGAGCGCGACGGCGGCTGCTGCACCACCGGCGAACGCGGCTGATGCTACGCCACCGGCGAGCACGGCGGCTGCTATACCACCGGCGGTTTCTAGTACGGAAACAAAGAAGAAAAGAGGGAGGCCGAGAAAGTATGGGCCGGACGGGAAGCGGCCGCTGACGCTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGGCCGGAGAGTTTCCGAATTGGAAACGAGATAACGATCTGTCTCTAGCGGTAATCAAGAAGCCGCAGAGATTCGAGTATGAGAATCCCGGTCCGAGACTTGCATACTCTGTTGGTGCCAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACGATGAAGGTCATGTCTTTCTCTCAGCAAGAATCCCGAGCTATTTGTATTCTTTCTGCAAATGGCACGATTTCAAATGTTACACTTCGACAGGCAACTTCTTCTGGAGGTACCTTAACGTATGAGGGTCGTTTTGAAATACTCTCATTGACTGGATCGTTTATGCCGACACAGAATGGAGGTACGAAGAGCAGATGTGGTGGGATGAGTGTCTCGCTGGCAGGTCAAGATGGTCGAGTTGTGGGCGGAGGACTAGCTGGTTTGTTGGTAGCAGCTGGTCCTGTGCAAGTTGTGGTTGGTAGTTTCCTTCCGGGTCACCAGCAAGAACAGAAGCCAAAGAAGCCGAGGAACGAATCCACAACCATTTTCTTTCCTCCCATCAACACCATCACTGGTGAAGAGACGAAGGCGATGTACGGCGGTGGTGTCAAGCCCGTTCTCACGACACCGTCCTACCAAGAACATAACTCACTGTCACCAAACCCAGTCACAGGCTTCAAATTATCCTCCACTGACAACTTACCTTTGCCTGACAAAGAACCCAAAACACAAAGTCAATCGAACTGTGAGGTTTCTTTCGCTTCAAAGTAG 1104 51.54 MEEKVTGVSGFAVTNDEALGSFQLAPTTETLKATDEPKVMASAGAATPPASATAAAAPPANAADATPPASTAAAIPPAVSSTETKKKRGRPRKYGPDGKRPLTLALSPMPISSSIPLAGEFPNWKRDNDLSLAVIKKPQRFEYENPGPRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILSLTGSFMPTQNGGTKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPINTITGEETKAMYGGGVKPVLTTPSYQEHNSLSPNPVTGFKLSSTDNLPLPDKEPKTQSQSNCEVSFASK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1411474 1415522 + MC10g0193 Mch10g0229 677322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0229 367 Gene3D - 160 290 - -
Mch10g0229 367 MobiDBLite consensus disorder prediction 321 367 - -
Mch10g0229 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 56 319 IPR039605 GO:0003680(InterPro)
Mch10g0229 367 MobiDBLite consensus disorder prediction 1 106 - -
Mch10g0229 367 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Mch10g0229 367 FunFam AT-hook motif nuclear-localized protein 1-like 160 291 - -
Mch10g0229 367 ProSiteProfiles PPC domain profile profile. 155 299 IPR005175 -
Mch10g0229 367 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 279 - -
Mch10g0229 367 CDD DUF296 159 273 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0229 Mch-Chr10:1411474 Mch6g2581 Mch-Chr6:27682019 1.07E-84 dispersed
Mch2g0285 Mch-Chr2:2141150 Mch10g0229 Mch-Chr10:1411474 3.58E-22 transposed
Mch6g2551 Mch-Chr6:27402797 Mch10g0229 Mch-Chr10:1411474 3.04E-107 transposed
Mch10g0229 Mch-Chr10:1411474 Mch6g2578 Mch-Chr6:27638872 2.44E-22 wgd
Mch10g0229 Mch-Chr10:1411474 Mch7g0752 Mch-Chr7:12143320 6.05E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0229 - - - 0.0