Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0246 ATGGCTCCACAAACCAAATTCCTCACTTTTTTCCTTACCCTTTTACCACTTCTTCCAAAATCCTCTTCGCAAACGGCCACCGATCAAATCCAAAGATGGTGCGCCACCACGCCGCACACACGAACTTGCATGTTCTTCATGTCGCCGATCAAATCCCCGCCGGAAAACCGACCGGAGTTTCGGAAAATGGCGATACAAACGGCCCTGGAAAAAGCCGCCGAGGCCCAACATTACGCGACCCGGTTCGGCCAGAGCTGTAAGAACACGCGCCAGAGAGCCGCGTGGGCCGACTGCTTGAAGCTGTACCACGACGCCGTTTTTCAGTTGAACCGCACTCTCCAGGGCCTCAGCCGCAAAGGGTGTACGGATTTCGACGCGCAGACGTGGCTGAGCTCTGCCCTCACAAGCATCGACACGTGTCTTTCCGGCGCGGCGGATCTCAATGTGACGGATTTTATAGCGCCGATCAGATTCCAGAATGTTTCGGAGATGATTAGCAATTGTTTGGCCATTAATGGGGCGTTTTTGGGGGATGGAAAAAATGGTACGGAGGAGGAAAATGGGTTTCCGATGTGGGTTTCGAGTGGTGATCGGAAATTGTTGCAGTCGTCGTCGACGAAGGTGAGGGCTAATTTGGTGGTGGCGAGAGATGGGTCGGGGAATTTCCGGACGGTTCAGGCGGCCATCAACGCCGCCGCGAGGAGGCGTGGGAGGGGTCGATTTGTAATTTACGTAAAGCGAGGGGTTTATAGAGAAAATATTGAAGTTGAGAATGATAATGGTAATTTAATGCTGGTCGGAGATGGGATGAGATTTACTGTCATTACAAGTGGGAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCAGCAACCGCCGGTATTGAAGGGCCTGCTTTCATAGCTCGCGACATTACCTTCGTCAACACCGCGGGCCCCCGGATGGGCCAAGCCGTTGCGCTCCGGTCATCGTCCGATCTATCGGTGTTCCACCGGTGCGGCTTTCAGGGCTACCAAGACACTCTAATGGTGCTCTCACAGAGACAATTCTACAAGCAATGTTATGTGTACGGAACAATTGACTTCATTTTTGGGAACGCAGCAGTTGTTTTACAAAACTGCATGATTTACGTACGAAGGCCCTTAAAGGGCCAGGTCAACGTCATCACGGCCCAAGGCCGAGAGGACCCGTATCAAAACAGCGGAATCTCGATCCACAATTCTCAAATACGGGCCGCTCCGGATTTGAGGCCCGTTATTGGGTCGGTCAAAACTTACTTGGGCCGGCCCTGGAAGAAGTATTCGCGGACCGTGATCATGAGGAGCTATATTGACAGCCTGGTGAGCCCAATGGGCTGGCTCGCGTGGCAAAGTAGTAAATTTGCTCAGGATACGCTGTATTATGGGGAATTTAAGAACTTTGGGCCTCGGGCTTCGACCCGGTATAGAGTGAGATGGCCTGGTTTTCATGTTATAAGGAGCCCAAATGTGGCCTCTCAGTTCACCGTCCGGCGACTCATCGCCGGCCAGACCTGGTTGCCGGCCACCGGAGTTCCCTTCACCCTTGGCCTCTGA 1575 53.33 MAPQTKFLTFFLTLLPLLPKSSSQTATDQIQRWCATTPHTRTCMFFMSPIKSPPENRPEFRKMAIQTALEKAAEAQHYATRFGQSCKNTRQRAAWADCLKLYHDAVFQLNRTLQGLSRKGCTDFDAQTWLSSALTSIDTCLSGAADLNVTDFIAPIRFQNVSEMISNCLAINGAFLGDGKNGTEEENGFPMWVSSGDRKLLQSSSTKVRANLVVARDGSGNFRTVQAAINAAARRRGRGRFVIYVKRGVYRENIEVENDNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIEGPAFIARDITFVNTAGPRMGQAVALRSSSDLSVFHRCGFQGYQDTLMVLSQRQFYKQCYVYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPYQNSGISIHNSQIRAAPDLRPVIGSVKTYLGRPWKKYSRTVIMRSYIDSLVSPMGWLAWQSSKFAQDTLYYGEFKNFGPRASTRYRVRWPGFHVIRSPNVASQFTVRRLIAGQTWLPATGVPFTLGL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1519008 1521567 + MC10g0210 Mch10g0246 677339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0246 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Mch10g0246 524 SMART PMEI_2 25 171 IPR006501 GO:0004857(InterPro)
Mch10g0246 524 Pfam Pectinesterase 211 509 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch10g0246 524 Pfam Plant invertase/pectin methylesterase inhibitor 29 171 IPR006501 GO:0004857(InterPro)
Mch10g0246 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 175 IPR035513 -
Mch10g0246 524 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Mch10g0246 524 PANTHER PECTINESTERASE 22 515 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch10g0246 524 FunFam Pectinesterase 205 524 - -
Mch10g0246 524 SUPERFAMILY Pectin lyase-like 207 523 IPR011050 -
Mch10g0246 524 NCBIfam pectinesterase inhibitor domain 8 172 IPR006501 GO:0004857(InterPro)
Mch10g0246 524 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Mch10g0246 524 Gene3D - 205 524 IPR012334 -
Mch10g0246 524 CDD PMEI-like_3 33 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0246 Mch-Chr10:1519008 Mch6g2635 Mch-Chr6:28118747 4.10E-193 dispersed
Mch10g0246 Mch-Chr10:1519008 Mch10g0248 Mch-Chr10:1522405 7.23E-207 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0246 K01051 - csv:101213944 814.298