Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0248 ATGTTCAAACCCAGCCAACCTGTCTCTCCATTTCATCCTAATTTGGCTCTCCTTCCCTATATAACCAAACCTGAAGTAGCTTGCTTAGCCTCATCAAAGCAAGAACCTGCTCTTCTAATGGAGAAGAGTTTTGGGGTGTTGTTTTTTCTTCTCTTCTTTTCACTCTCTTCTCCAGCCTTCTCCAAGCATGCCTCTAATGGCATAGATTGGTGGTGCAGCAAAACCACGTACCCTGAGACCTGCAAGTATTTCTTCAACCATGGCAGCAATGCTGCTCCCAAAGATATGTCTGAGTTCAAGAAAATGGTGACCAAATTCGCCATGGAGAGAGCTTTGAGAGCCGAGAGCCATGCTAAGGGTGTTGGTTCCAAGTGCCGAAATGAGAAGGAAAAGGCTGCTTGGGCTGATTGCTTGGAGCTCTACCAAAACACCATCCTTCAGCTCAACCACACTCTAGATTCCTCCTCTAAATGTACTGAGTTTGATATCCAAACCTGGCTCAGTACCGCCCTAACCAACCTTGAAACGTGCTACACCGGGTTTGCTGAGTTTAATGTTTCGGACCATGTATTGCCGCTGATCATGTCGAACAATGTCACAAAGCTGATAAGCAACAGCTTGGCGATTAACAATGCTTCAGCTTGGCCGGGGAAAGAGACTTATAAAGAGGGTTTTCCAAGTTGGCTTTTAGGTGGCGACAGGAGGCTACTGCAGTCATCTTCAGTAAAGACAGACCTTGTCGTGGCTCAGGACGGATCCGGTGACCATAGGACAGTTGGAGCGGCTCTAGAGGCAGCTGCAAAAAGGAAGACAGGTGGAAGATTTGTTATACATGTAAAGAGAGGGGTTTACGAAGAAAACCTCGAGATAGGAAATAAGATGAAGAATATAATGCTCGTCGGAGATGGAATGAGATTTACCATCATTACTGGTAGTCGAAGTGTTAGAGGAGGCTCCACCACTTTCCATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGTGGTATCACATTCCGAAACACTGCTGGTCCTGAAAACCATCAAGCAGTTGCTCTCCGATCTGGCGCTGATTTTTCTGTCTTCTACCGCTGTGGCTTTGAAGGGTATCAGGATACCCTCTATGTCCATTCACAGAGACAATTCTATAAAGAGTGTTATATTTATGGCACGGTAGATTTTATATTCGGCAATGCTGCAGTTGTTCTACAGAACTGCATGATTTATGCAAGGAGGCCAATGAATGGTCAGAAGAATGCAGTCACTGCTCAAGGACGGACTGATCCAAACCAAAATACTGGCATTTCGATCCACAACTCGCGTGTCATGGCCACAGATGACCTAAAACAAGTGGAGAGCACAGTGAAAACCTACTTGGGAAGGCCGTGGAAGGAGTATTCTCGAACAGTTTTCATGCAAACTTACCTCGATAGTTTGGTTGATCCAGCAGGTTGGTTGGAGTGGGATGGTGAATTTGCACTGAATACTTTATATTATGGAGAGTATAAGAACATGGGTCCTGGTTCATCAACAAGCCAGAGAGTGAAGTGGAGGGGTTACCACATTGTAACCAATTCAACAGAGGCATCAAAGTTCACCGTTCAAAATTTCATTGCAGGGCAGTCATGGCTGCCAGGCACAGAAGTCCCATTTACTCCTGGACTCTAA 1674 45.64 MFKPSQPVSPFHPNLALLPYITKPEVACLASSKQEPALLMEKSFGVLFFLLFFSLSSPAFSKHASNGIDWWCSKTTYPETCKYFFNHGSNAAPKDMSEFKKMVTKFAMERALRAESHAKGVGSKCRNEKEKAAWADCLELYQNTILQLNHTLDSSSKCTEFDIQTWLSTALTNLETCYTGFAEFNVSDHVLPLIMSNNVTKLISNSLAINNASAWPGKETYKEGFPSWLLGGDRRLLQSSSVKTDLVVAQDGSGDHRTVGAALEAAAKRKTGGRFVIHVKRGVYEENLEIGNKMKNIMLVGDGMRFTIITGSRSVRGGSTTFHSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADFSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKQVESTVKTYLGRPWKEYSRTVFMQTYLDSLVDPAGWLEWDGEFALNTLYYGEYKNMGPGSSTSQRVKWRGYHIVTNSTEASKFTVQNFIAGQSWLPGTEVPFTPGL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1522405 1524655 + MC10g_new0038 Mch10g0248 677341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0248 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 212 IPR035513 -
Mch10g0248 557 PANTHER PECTINESTERASE 48 547 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch10g0248 557 CDD PMEI-like_3 70 212 - -
Mch10g0248 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 211 IPR035513 -
Mch10g0248 557 SUPERFAMILY Pectin lyase-like 241 556 IPR011050 -
Mch10g0248 557 FunFam Pectinesterase 239 557 - -
Mch10g0248 557 Pfam Pectinesterase 245 542 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch10g0248 557 NCBIfam pectinesterase inhibitor domain 40 211 IPR006501 GO:0004857(InterPro)
Mch10g0248 557 Pfam Plant invertase/pectin methylesterase inhibitor 68 209 IPR006501 GO:0004857(InterPro)
Mch10g0248 557 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Mch10g0248 557 SMART PMEI_2 63 209 IPR006501 GO:0004857(InterPro)
Mch10g0248 557 Gene3D - 239 557 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0248 Mch-Chr10:1522405 Mch6g2635 Mch-Chr6:28118747 1.84E-260 dispersed
Mch10g0246 Mch-Chr10:1519008 Mch10g0248 Mch-Chr10:1522405 7.23E-207 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0248 K01051 - csv:101211449 925.235