Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0269 ATGGCTGATTCCAGGGCTCTTCCTGCTCGCTGCGCAGTGGGGATCGTTAAGAGTATCCGCCTGGAGAACTTCATGTGTCACAGCAACTTGCATATTGAGTTTGGCGAGTGGGTTAATTTCATTACTGGTCAGAACGGAAGTGGCAAGAGTGCTATATTGACTGCTTTATGTGTGGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCAACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGAATTGAAAAATAATGGGGAGGATGCTTTTAAGCATGGAATATATGGTGACGTCATAATTATTGAGAGAAGGATTTCTGAATCCACCAGTGGTATTGTTTTGAAGGACTCTCAAGGAAAAAAGGTTGCAGGTCGGAGGGATGAACTTCGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTTTTCAAGGCTACTCTTCTTCAGCAAGTTGATGATCTATTGAAAAACATTTTTGATCAATTGAGATCTTCGAATGCGCTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCAAGTAAAAATTAGAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTCCAACATTTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAACAACTTCAAGAGCATAGTGCAAAAATAGGAAAGCTCAAAGATCGCGTTCCTATTTGTCGAGCAAAAATTGATCATCAAGTGGGTCTGGTGGAAAAGTTAAGAGAACGTCATATCGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCCGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACCCTTTCCTTGGCAACAAGAGAGAATCACGGACTTGAAGAGGAGCATTGCCGCAAAATGAACTACATCCAAAAGATGGTTAAGCGTGCTAGGCTGCTTGAGCAACAAGTTCATGATATTCATGAGCAGCACATGAAAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATTGGAGTCTGAAGCTGCTAAATCAACAGTAATGAGGTTGAAGGAGGAGGAGAATGCCTTATTGGATAGCCTACAAAGTGTGAGAAGTGAAATAAAAAGGATTGCTGAAGAGATTGAAGGTTATGAGAAAAGGCATTACGAATTTTCTCACTCTATTCGAGAGCTTCGGCGACATCAAACAAACAAGGTCACAGCTTTCGGAGGTGATAGGGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAGAAACCTCCCATTGGCCCAATTGGTTCCCATCTGAATTTGGTTAACGGTGATATGTGGGCTCCTGCTGTTGAAAATGCCATCGGGAGGTTGCTCAATGCTTTCATTGTGACTGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAATGAAGCTAATTATAAGCAACTCCCGATTATCATCTATGACTTTTCAAGACCATTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAGAGCACCCTACAACCCTTTCAGTCGTTCACTCTGAAAACCATACTGTCATCAATGTTTTGGTAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGTGGGTAAATCAGTCGCATTTGACCAACGGATCTCAAACCTCAAGGAGGTTTATACATTAGATGGATACAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCCCCAGCTAGGAGACCTAGAAGTGGCAGACTATGTAGTTCTTTTGATGATCACATCAAAAGTCTTGAAAGAGATGTATTGAATGTAAAAGAAGAAACCGAGCGATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTCGGGGATCTTGACGAGAACCTAAGCAATGCAAAGGTGAAGTGTCGGAGTGCGGAACACTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCGCAAGTTGCTGAAACTAATTCATTACCTTCATCAAATGTTGATGAGCTTCATCAAGAAATTTCTAAAATCCAAGAGGAGATACAAGAGAATGAGATGCTACTGGAAAAGTTGAGAGTTAGAAAGAAAGAAGCGGAAGCAAAGACAAAAGATCTTAAAGTATCATTTGAGAATCTGTGTGAGTCGGCAAAAGGAGAAGTTGATGCATTTGAAGAAGCTGAGAGAGAGATGTTGCAGATTGAACGAGATCTGCATTCTTCAGAAAAGGAAAAGGATCATTATGAAGGTATTATGGCTAACAAGGTCCTTTCTGATATCAAAGAAGCAGAGAGACAATATGAGGAGCTTGAGCGCCACCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACATTTAACGAGGCTAAATCAGAGACTTAACAATGAGACCCGGCGATGTTCTGAATCTCTGGAAGACCTGAGAATGATGTATGAGAAAAAGGAACGTACAATCATAAGAAAACAACAGACTTACAGAACTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTAGAGCTGCGGCGCAGAAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGCCAATTGACTTGGCAGTTTAATGGTCATTTAAGGAAAAAAGGGATCAGTGGACATATAAAAGTTAATTACGAGGAAAAGACCCTCTCAATTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTCTCAACTCTATGCTTTACTTTAGCGTTACATGAAATGACAGAAGCCCCATTTCGCGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGAAAGATCAGCTTAGACACTCTCGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATTACCCCTCATGAAATCGGG 3102 40.91 MADSRALPARCAVGIVKSIRLENFMCHSNLHIEFGEWVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIHVELKNNGEDAFKHGIYGDVIIIERRISESTSGIVLKDSQGKKVAGRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDQLRSSNALVDDLESTIRPVEKELNELQVKIRNMEHVEEISQQVQHLKKKLAWSWVYDVDKQLQEHSAKIGKLKDRVPICRAKIDHQVGLVEKLRERHIEKKAQIASMMEKTSEVRRMKDELQETLSLATRENHGLEEEHCRKMNYIQKMVKRARLLEQQVHDIHEQHMKNTQAEESEIEEKLKELELESEAAKSTVMRLKEEENALLDSLQSVRSEIKRIAEEIEGYEKRHYEFSHSIRELRRHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDMWAPAVENAIGRLLNAFIVTDHRDSLLLRGCANEANYKQLPIIIYDFSRPLLNIPAHMLPQTEHPTTLSVVHSENHTVINVLVDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVYTLDGYKMFSRGSVQTILPPARRPRSGRLCSSFDDHIKSLERDVLNVKEETERCRKRKRAAEEQLGDLDENLSNAKVKCRSAEHFLMSKNLELQDLRKSQVAETNSLPSSNVDELHQEISKIQEEIQENEMLLEKLRVRKKEAEAKTKDLKVSFENLCESAKGEVDAFEEAEREMLQIERDLHSSEKEKDHYEGIMANKVLSDIKEAERQYEELERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAHLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKQQTYRTFREKLNACQKALELRRRKFERNANLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSIEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHEIG 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1728075 1745411 - MC10g0224 Mch10g0269 677362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0269 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 1029 IPR027417 -
Mch10g0269 1034 Coils Coil 766 786 - -
Mch10g0269 1034 SUPERFAMILY Smc hinge domain 452 611 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Mch10g0269 1034 Coils Coil 635 676 - -
Mch10g0269 1034 Gene3D - 839 1033 IPR027417 -
Mch10g0269 1034 Coils Coil 203 223 - -
Mch10g0269 1034 Coils Coil 312 332 - -
Mch10g0269 1034 Pfam RecF/RecN/SMC N terminal domain 16 1029 IPR003395 -
Mch10g0269 1034 Coils Coil 340 360 - -
Mch10g0269 1034 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 13 1033 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Mch10g0269 1034 Gene3D - 16 272 IPR027417 -
Mch10g0269 1034 Coils Coil 850 888 - -
Mch10g0269 1034 Coils Coil 795 822 - -
Mch10g0269 1034 Coils Coil 362 424 - -
Mch10g0269 1034 Coils Coil 710 751 - -
Mch10g0269 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 300 IPR027417 -
Mch10g0269 1034 Coils Coil 284 304 - -
Mch10g0269 1034 Gene3D - 628 800 - -
Mch10g0269 1034 Coils Coil 900 920 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0269 K22804 - - csv:101208493 1780.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0269 Mch-Chr10:1728075 Mch9g0589 Mch-Chr9:4362932 1.86E-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0589 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.3 0.0e+00 1402.5
Mch10g0269 . 14 1033 Structural Maintenance of Chromosomes family AT5G07660 62.6 0.0e+00 1208.4
Mch10g0269 . 2 1033 Structural Maintenance of Chromosomes family AT5G61460 65.5 0.0e+00 1276.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32