Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0289 TTAACAGATCAATGGCCCGATTTCCCCCTCAAACTCAACGACATGATTGTCTTCAACTCCCTCCACGACGCCGTCGTTTTTGGCCTTTCCCCACTCCATTCCTCCTCCGCCGCCGCCCAGCTCCCGACCGTTAAACCCGACCCCGGCTTCTCTGCACCAACCAAGGCTTTGTCGCCGCCCTTGGGCTGCCGAGGGCAGCACTACCGAGGGGTCCGACGCCGACCCTGGGGGAAGTATGCGGCGGAGATTCGAGACCCGGCCAAGAGTGGCGCACGTGTGTGGCTCGGCACGTACGAGACGGCTGAGGATGCGGCGTTGGCTTACGACCGCGCCGCTTTCCAAATGCGCGGCTCTAAGGCCTTGCTTAATTTTCCAAACCGCATTGGCTCCGGTGACCCGCCGCCACATAGAGTCTCGGCTCGACGC 426 62.21 LTDQWPDFPLKLNDMIVFNSLHDAVVFGLSPLHSSSAAAQLPTVKPDPGFSAPTKALSPPLGCRGQHYRGVRRRPWGKYAAEIRDPAKSGARVWLGTYETAEDAALAYDRAAFQMRGSKALLNFPNRIGSGDPPPHRVSARR 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1908009 1908434 - MC10g0240 Mch10g0289 677382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0289 142 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
Mch10g0289 142 Gene3D AP2/ERF domain 66 127 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0289 142 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0289 142 MobiDBLite consensus disorder prediction 40 68 - -
Mch10g0289 142 FunFam Ethylene-responsive transcription factor 2 66 126 - -
Mch10g0289 142 SMART rav1_2 67 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0289 142 Pfam AP2 domain 67 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0289 142 CDD AP2 66 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0289 142 PANTHER DNA-BINDING DOMAIN 46 127 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Mch10g0289 142 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0289 142 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0289 Mch-Chr10:1908009 Mch6g2108 Mch-Chr6:23337659 4.69E-47 dispersed
Mch10g0288 Mch-Chr10:1902246 Mch10g0289 Mch-Chr10:1908009 7.25E-30 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42424 PF00847 AP2 4.80E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0289 K09286 - cit:102626847 166.777