Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0289 | TTAACAGATCAATGGCCCGATTTCCCCCTCAAACTCAACGACATGATTGTCTTCAACTCCCTCCACGACGCCGTCGTTTTTGGCCTTTCCCCACTCCATTCCTCCTCCGCCGCCGCCCAGCTCCCGACCGTTAAACCCGACCCCGGCTTCTCTGCACCAACCAAGGCTTTGTCGCCGCCCTTGGGCTGCCGAGGGCAGCACTACCGAGGGGTCCGACGCCGACCCTGGGGGAAGTATGCGGCGGAGATTCGAGACCCGGCCAAGAGTGGCGCACGTGTGTGGCTCGGCACGTACGAGACGGCTGAGGATGCGGCGTTGGCTTACGACCGCGCCGCTTTCCAAATGCGCGGCTCTAAGGCCTTGCTTAATTTTCCAAACCGCATTGGCTCCGGTGACCCGCCGCCACATAGAGTCTCGGCTCGACGC | 426 | 62.21 | LTDQWPDFPLKLNDMIVFNSLHDAVVFGLSPLHSSSAAAQLPTVKPDPGFSAPTKALSPPLGCRGQHYRGVRRRPWGKYAAEIRDPAKSGARVWLGTYETAEDAALAYDRAAFQMRGSKALLNFPNRIGSGDPPPHRVSARR | 142 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1908009 | 1908434 | - | MC10g0240 | Mch10g0289 | 677382 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0289 | 142 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677(InterPro) | |
Mch10g0289 | 142 | Gene3D | AP2/ERF domain | 66 | 127 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0289 | 142 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 125 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0289 | 142 | MobiDBLite | consensus disorder prediction | 40 | 68 | - | - | |
Mch10g0289 | 142 | FunFam | Ethylene-responsive transcription factor 2 | 66 | 126 | - | - | |
Mch10g0289 | 142 | SMART | rav1_2 | 67 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0289 | 142 | Pfam | AP2 domain | 67 | 118 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0289 | 142 | CDD | AP2 | 66 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0289 | 142 | PANTHER | DNA-BINDING DOMAIN | 46 | 127 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Mch10g0289 | 142 | PRINTS | Ethylene responsive element binding protein signature | 91 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g0289 | 142 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0289 | Mch-Chr10:1908009 | Mch6g2108 | Mch-Chr6:23337659 | 4.69E-47 | dispersed | |
Mch10g0288 | Mch-Chr10:1902246 | Mch10g0289 | Mch-Chr10:1908009 | 7.25E-30 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42424 | PF00847 | AP2 | 4.80E-15 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0289 | K09286 | - | cit:102626847 | 166.777 |