Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0293 | ATGTTTCAAGGGTTTTTTCCCGGCATAAATAATGCCGTTTTCGACCATGATTTTTCCGGCTGCCACCAGCTGATGGAGCAAGTGGAAGACGCGGCGGCGGTGTTCGGCTCCGACGAGTTTCGGATGTTCGCGTACAAGATCCAACGGTGTCCGAGGACGCGCAGCCACGACTGGACCGAGTGTCCGTACGCCCACCGCGGCGAGAAGGCTCAACGCCGCGACCTACGGCGGTTCAACTACTCCGCCGTGGCCTGCCCGGCGTTCCGTAACGGCAACTGCCCTAGAGGTGACTTCTGCGAGTATGCTCACGGTGTGTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGCGCTTGCAATGCCGGCCGGTTTTGCCAACGGAAAGTTTGTTTCTTTGCACACACGCCGGAGCAGCTCCGGTCAGAGACGAAACAAAAGTTTCATTTCAATGCTCACCGAACACGTGTGCCGGTGGTTGCCGTTGAAGCTCCGTTGGAGAGTAAGAACGACGACGTTTCGAATATTGTGAACGGTCTGAAAGGGCTTACGGTGAGAGAGATCAGAGAACGGAAAAATGACCGAAACTTCGGGTGGGAGGTATCGGATTCCGATCTGCCGCATATCGGTTGGATACGCGAGCTGTTACAG | 651 | 56.84 | MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWIRELLQ | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1925443 | 1926093 | - | MC10g0244 | Mch10g0293 | 677386 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0293 | 217 | Gene3D | - | 74 | 151 | - | - | |
Mch10g0293 | 217 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 83 | 104 | IPR000571 | GO:0046872(InterPro) | |
Mch10g0293 | 217 | SUPERFAMILY | CCCH zinc finger | 78 | 109 | IPR036855 | GO:0046872(InterPro) | |
Mch10g0293 | 217 | ProSiteProfiles | Zinc finger C3H1-type profile. | 79 | 106 | IPR000571 | GO:0046872(InterPro) | |
Mch10g0293 | 217 | SMART | c3hfinal6 | 79 | 105 | IPR000571 | GO:0046872(InterPro) | |
Mch10g0293 | 217 | SMART | c3hfinal6 | 114 | 137 | IPR000571 | GO:0046872(InterPro) | |
Mch10g0293 | 217 | PANTHER | UNKEMPT FAMILY MEMBER | 32 | 146 | IPR045234 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0293 | Mch-Chr10:1925443 | Mch4g0140 | Mch-Chr4:937309 | 1.31E-54 | dispersed | |
Mch10g0293 | Mch-Chr10:1925443 | Mch6g0886 | Mch-Chr6:6190545 | 1.10E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42425 | PF00642 | zf-CCCH | 7.20E-06 | CL0537 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0293 | - | - | - | 0.0 |