Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0293 ATGTTTCAAGGGTTTTTTCCCGGCATAAATAATGCCGTTTTCGACCATGATTTTTCCGGCTGCCACCAGCTGATGGAGCAAGTGGAAGACGCGGCGGCGGTGTTCGGCTCCGACGAGTTTCGGATGTTCGCGTACAAGATCCAACGGTGTCCGAGGACGCGCAGCCACGACTGGACCGAGTGTCCGTACGCCCACCGCGGCGAGAAGGCTCAACGCCGCGACCTACGGCGGTTCAACTACTCCGCCGTGGCCTGCCCGGCGTTCCGTAACGGCAACTGCCCTAGAGGTGACTTCTGCGAGTATGCTCACGGTGTGTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGCGCTTGCAATGCCGGCCGGTTTTGCCAACGGAAAGTTTGTTTCTTTGCACACACGCCGGAGCAGCTCCGGTCAGAGACGAAACAAAAGTTTCATTTCAATGCTCACCGAACACGTGTGCCGGTGGTTGCCGTTGAAGCTCCGTTGGAGAGTAAGAACGACGACGTTTCGAATATTGTGAACGGTCTGAAAGGGCTTACGGTGAGAGAGATCAGAGAACGGAAAAATGACCGAAACTTCGGGTGGGAGGTATCGGATTCCGATCTGCCGCATATCGGTTGGATACGCGAGCTGTTACAG 651 56.84 MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWIRELLQ 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1925443 1926093 - MC10g0244 Mch10g0293 677386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0293 217 Gene3D - 74 151 - -
Mch10g0293 217 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 104 IPR000571 GO:0046872(InterPro)
Mch10g0293 217 SUPERFAMILY CCCH zinc finger 78 109 IPR036855 GO:0046872(InterPro)
Mch10g0293 217 ProSiteProfiles Zinc finger C3H1-type profile. 79 106 IPR000571 GO:0046872(InterPro)
Mch10g0293 217 SMART c3hfinal6 79 105 IPR000571 GO:0046872(InterPro)
Mch10g0293 217 SMART c3hfinal6 114 137 IPR000571 GO:0046872(InterPro)
Mch10g0293 217 PANTHER UNKEMPT FAMILY MEMBER 32 146 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0293 Mch-Chr10:1925443 Mch4g0140 Mch-Chr4:937309 1.31E-54 dispersed
Mch10g0293 Mch-Chr10:1925443 Mch6g0886 Mch-Chr6:6190545 1.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42425 PF00642 zf-CCCH 7.20E-06 CL0537 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0293 - - - 0.0