Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0326 ATGGGTACCAGGACCCAGCAGCCATGCCGGGAAGACGACGACGACGACCTTCCTGGCGGCCCCGGCGCCACAACAATTTCGGGTCAGTCCGTTTCCATGAGTGGCAGTGTGGGTTCTCCATCTAGCCGCAGCGAGCAGACCATGGCCACCCCTGCCAGCGACAACACTTTTCTCCGATTAAACAACCTCGACATTCACGGCGACGAGGCCGGCTCCCAACCACCTACTGCTAATGTGAAGAAAAAGAGAGGTCAGCGAGCCGTTGGAGGGGACAAGAGTGGAAGAGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTGGCAGAGTTTGCTGACCCTGGCAACAGTGTTGCATCCCCAGATCAGCAACAGTACGACGAAAAAAACATCAGGCGAAGGGTATATGATGCACTGAATGTTCTCATGGCAATGGATATTATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTACCACGAACCAGCCTGAATGATATTGAAGAACTAAAGGCTGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTCTGAGAATGCTCCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTGGAGATAGAAATATCCGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAGTGCGATAATACAGCGCAAAATTTTACTCCCGATGGCGGGGAGGGTTCTAGCATGTCAGGCATGTACCAACAACCCCAGATCCCTCTTCCTTCAATGTCTAACACGCCCGTTAGAACTCCAACCTCACCACCACTCCCTGGAATTATAAAAGCACGTGTCAAACACGAACATTGA 1044 48.95 MGTRTQQPCREDDDDDLPGGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQPPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQQPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2159203 2164075 - MC10g0269 Mch10g0326 677419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0326 347 Gene3D Transcription factor DP 181 304 IPR038168 -
Mch10g0326 347 MobiDBLite consensus disorder prediction 1 95 - -
Mch10g0326 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch10g0326 347 SUPERFAMILY E2F-DP heterodimerization region 181 294 IPR037241 -
Mch10g0326 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Mch10g0326 347 FunFam Transcription factor-like protein DPB 87 180 - -
Mch10g0326 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch10g0326 347 SMART DP_2 182 345 IPR014889 -
Mch10g0326 347 PANTHER TRANSCRIPTION FACTOR DP 24 316 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Mch10g0326 347 PIRSF Txn_factor_DP 5 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Mch10g0326 347 MobiDBLite consensus disorder prediction 23 60 - -
Mch10g0326 347 Coils Coil 191 225 - -
Mch10g0326 347 FunFam Transcription factor-like protein DPB 181 306 - -
Mch10g0326 347 Pfam Transcription factor DP 183 288 IPR014889 -
Mch10g0326 347 CDD DP_DD 180 283 IPR014889 -
Mch10g0326 347 Gene3D - 88 180 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0326 K04683 - - csv:101216863 654.055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42429 PF08781 DP 3.60E-41 No_clan Mch TF