Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0326 ATGGGTACCAGGACCCAGCAGCCATGCCGGGAAGACGACGACGACGACCTTCCTGGCGGCCCCGGCGCCACAACAATTTCGGGTCAGTCCGTTTCCATGAGTGGCAGTGTGGGTTCTCCATCTAGCCGCAGCGAGCAGACCATGGCCACCCCTGCCAGCGACAACACTTTTCTCCGATTAAACAACCTCGACATTCACGGCGACGAGGCCGGCTCCCAACCACCTACTGCTAATGTGAAGAAAAAGAGAGGTCAGCGAGCCGTTGGAGGGGACAAGAGTGGAAGAGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTGGCAGAGTTTGCTGACCCTGGCAACAGTGTTGCATCCCCAGATCAGCAACAGTACGACGAAAAAAACATCAGGCGAAGGGTATATGATGCACTGAATGTTCTCATGGCAATGGATATTATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTACCACGAACCAGCCTGAATGATATTGAAGAACTAAAGGCTGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTCTGAGAATGCTCCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTGGAGATAGAAATATCCGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAGTGCGATAATACAGCGCAAAATTTTACTCCCGATGGCGGGGAGGGTTCTAGCATGTCAGGCATGTACCAACAACCCCAGATCCCTCTTCCTTCAATGTCTAACACGCCCGTTAGAACTCCAACCTCACCACCACTCCCTGGAATTATAAAAGCACGTGTCAAACACGAACATTGA 1044 48.95 MGTRTQQPCREDDDDDLPGGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQPPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQQPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2159203 2164075 - MC10g0269 Mch10g0326 677419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0326 347 Gene3D Transcription factor DP 181 304 IPR038168 -
Mch10g0326 347 MobiDBLite consensus disorder prediction 1 95 - -
Mch10g0326 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch10g0326 347 SUPERFAMILY E2F-DP heterodimerization region 181 294 IPR037241 -
Mch10g0326 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Mch10g0326 347 FunFam Transcription factor-like protein DPB 87 180 - -
Mch10g0326 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch10g0326 347 SMART DP_2 182 345 IPR014889 -
Mch10g0326 347 PANTHER TRANSCRIPTION FACTOR DP 24 316 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Mch10g0326 347 PIRSF Txn_factor_DP 5 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Mch10g0326 347 MobiDBLite consensus disorder prediction 23 60 - -
Mch10g0326 347 Coils Coil 191 225 - -
Mch10g0326 347 FunFam Transcription factor-like protein DPB 181 306 - -
Mch10g0326 347 Pfam Transcription factor DP 183 288 IPR014889 -
Mch10g0326 347 CDD DP_DD 180 283 IPR014889 -
Mch10g0326 347 Gene3D - 88 180 IPR036388 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42429 PF08781 DP 3.60E-41 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0326 K04683 - csv:101216863 654.055