Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0330 ATGTCATTAACTAATGTGAAATCCTTGCAAGTCCTGGATCTTTCATACAACGGCCTAACTGGAGATGTTCCGGTCAATGGTTCTTTCTCTCTTTTTACCCCTATCAGTTTTGCTCATAATAATCTTAATGAATCTGCACATACTCCACCACCTCCTTTACCACCTTCACCAACCCCTGCATCAGGTAATAGTGCCACTGGAGCAATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCAATTGCACTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAGGTTCTCTCTACGTGAATTACAAGTTGCAACAGATCATTTTAGCAACAAACAAATTCTAGGGAAAGGTGGTTTTGGCAAGGTCTACAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAGCGATCCCAGGGTGGGGAGCTGCAATTCCAAACAGAAGTGGAGATGATTAGCATGGCTGTACATCGTAATTTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGGTGCTGGTCTATCCATATATGGTTAATGGAAGTGTAGCATCATGCTTAAGAGAGCGTTCAGAAACACAACCTCCACTTAGTTGGTTGCACCGAAAACGCATTGCTTTGGGATCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATAATTCATCGTGATGTGAAAGCTGCAAACATTTTGCTTGATGAGGAGTTCGAAGCTGTTGTGGGTGATTTTGGGTTGGCCAAGCTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGTGGAACAATTGGGCATATAGCGCCCGAGTACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTCGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCTCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCTGATCTTGCGGGAAACTATGCGGATGACGAAGTCGAGCAGCTTATTCAAGTTGCTCTGTTGTGCACACAAGGCACGCCTACAGAGCGGCCTAAGATGTCGGAGGTTGTACGGATGCTTGAAGGTGATGGCTTGGCCGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTCCATCAAGACGTCAGCCGCCATCCTCACCCGAGTACTACCTGGATTCTTGACTCTACTGCTGAAATTCCTCCTGATGAATTGTCTGGTCCAAGATGA 1365 46.23 MSLTNVKSLQVLDLSYNGLTGDVPVNGSFSLFTPISFAHNNLNESAHTPPPPLPPSPTPASGNSATGAIAGGVAAAAALLFAAPAIALALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKQILGKGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVNGSVASCLRERSETQPPLSWLHRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGNYADDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDVSRHPHPSTTWILDSTAEIPPDELSGPR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2190504 2196349 + MC10g_new0058 Mch10g0330 677423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0330 454 Pfam Protein kinase domain 132 403 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0330 454 Gene3D Ribonuclease Inhibitor 1 48 IPR032675 -
Mch10g0330 454 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 454 - -
Mch10g0330 454 SMART serkin_6 131 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0330 454 SUPERFAMILY Protein kinase-like (PK-like) 110 406 IPR011009 -
Mch10g0330 454 Gene3D Transferase(Phosphotransferase) domain 1 208 425 - -
Mch10g0330 454 ProSiteProfiles Protein kinase domain profile. 131 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0330 454 MobiDBLite consensus disorder prediction 42 64 - -
Mch10g0330 454 ProSitePatterns Protein kinases ATP-binding region signature. 137 159 IPR017441 GO:0005524(InterPro)
Mch10g0330 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0330 454 MobiDBLite consensus disorder prediction 425 454 - -
Mch10g0330 454 FunFam Somatic embryogenesis receptor kinase 1 100 207 - -
Mch10g0330 454 FunFam Somatic embryogenesis receptor-like kinase 1 208 425 - -
Mch10g0330 454 Gene3D Phosphorylase Kinase; domain 1 100 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0330 Mch-Chr10:2190504 Mch10g0718 Mch-Chr10:4959368 5.80E-221 dispersed
Mch10g0330 Mch-Chr10:2190504 Mch4g2400 Mch-Chr4:25103365 7.02E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76998 PF00069 Pkinase 2.40E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0330 K13416 - csv:101216389 822.002