Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0330 | ATGTCATTAACTAATGTGAAATCCTTGCAAGTCCTGGATCTTTCATACAACGGCCTAACTGGAGATGTTCCGGTCAATGGTTCTTTCTCTCTTTTTACCCCTATCAGTTTTGCTCATAATAATCTTAATGAATCTGCACATACTCCACCACCTCCTTTACCACCTTCACCAACCCCTGCATCAGGTAATAGTGCCACTGGAGCAATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCAATTGCACTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAGGTTCTCTCTACGTGAATTACAAGTTGCAACAGATCATTTTAGCAACAAACAAATTCTAGGGAAAGGTGGTTTTGGCAAGGTCTACAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAGCGATCCCAGGGTGGGGAGCTGCAATTCCAAACAGAAGTGGAGATGATTAGCATGGCTGTACATCGTAATTTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGGTGCTGGTCTATCCATATATGGTTAATGGAAGTGTAGCATCATGCTTAAGAGAGCGTTCAGAAACACAACCTCCACTTAGTTGGTTGCACCGAAAACGCATTGCTTTGGGATCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATAATTCATCGTGATGTGAAAGCTGCAAACATTTTGCTTGATGAGGAGTTCGAAGCTGTTGTGGGTGATTTTGGGTTGGCCAAGCTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGTGGAACAATTGGGCATATAGCGCCCGAGTACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTCGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCTCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCTGATCTTGCGGGAAACTATGCGGATGACGAAGTCGAGCAGCTTATTCAAGTTGCTCTGTTGTGCACACAAGGCACGCCTACAGAGCGGCCTAAGATGTCGGAGGTTGTACGGATGCTTGAAGGTGATGGCTTGGCCGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTCCATCAAGACGTCAGCCGCCATCCTCACCCGAGTACTACCTGGATTCTTGACTCTACTGCTGAAATTCCTCCTGATGAATTGTCTGGTCCAAGATGA | 1365 | 46.23 | MSLTNVKSLQVLDLSYNGLTGDVPVNGSFSLFTPISFAHNNLNESAHTPPPPLPPSPTPASGNSATGAIAGGVAAAAALLFAAPAIALALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKQILGKGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVNGSVASCLRERSETQPPLSWLHRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGNYADDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDVSRHPHPSTTWILDSTAEIPPDELSGPR | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2190504 | 2196349 | + | MC10g_new0058 | Mch10g0330 | 677423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0330 | 454 | Pfam | Protein kinase domain | 132 | 403 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch10g0330 | 454 | Gene3D | Ribonuclease Inhibitor | 1 | 48 | IPR032675 | - | |
Mch10g0330 | 454 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 2 | 454 | - | - | |
Mch10g0330 | 454 | SMART | serkin_6 | 131 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch10g0330 | 454 | SUPERFAMILY | Protein kinase-like (PK-like) | 110 | 406 | IPR011009 | - | |
Mch10g0330 | 454 | Gene3D | Transferase(Phosphotransferase) domain 1 | 208 | 425 | - | - | |
Mch10g0330 | 454 | ProSiteProfiles | Protein kinase domain profile. | 131 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch10g0330 | 454 | MobiDBLite | consensus disorder prediction | 42 | 64 | - | - | |
Mch10g0330 | 454 | ProSitePatterns | Protein kinases ATP-binding region signature. | 137 | 159 | IPR017441 | GO:0005524(InterPro) | |
Mch10g0330 | 454 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 254 | 266 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch10g0330 | 454 | MobiDBLite | consensus disorder prediction | 425 | 454 | - | - | |
Mch10g0330 | 454 | FunFam | Somatic embryogenesis receptor kinase 1 | 100 | 207 | - | - | |
Mch10g0330 | 454 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 208 | 425 | - | - | |
Mch10g0330 | 454 | Gene3D | Phosphorylase Kinase; domain 1 | 100 | 207 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0330 | Mch-Chr10:2190504 | Mch10g0718 | Mch-Chr10:4959368 | 5.80E-221 | dispersed | |
Mch10g0330 | Mch-Chr10:2190504 | Mch4g2400 | Mch-Chr4:25103365 | 7.02E-151 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76998 | PF00069 | Pkinase | 2.40E-45 | CL0016 | Mch | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0330 | K13416 | - | csv:101216389 | 822.002 |