Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0339 ATGGACTCCGTCTTCTTCGGCGCGACGGGCAACGTAGCCACCTGCTGCGTTTCCAGAGCCTTGAATCGGAAACTCTCTGAAATTGTTCGGAGAAAATGTATTCACGGCGGTGATCGAGCTCGCCGTTTCAGCTGCATTTCCAGTTACCTCGGCCTCCACGGAACTGTATGTTCTGGCTCCTGTTCTACTTCGCTCCGGACTCTACAGGTGGTGCTGCCTTCGCTGCGGCGTCGTTTGCAGTGCGTTTCGAGCTCCTCTGTGTCTTTTGCTTCTGGCGGCGGGAACGGTGGTCTTGGAGGGAAGAATGGCGGCGGAGGTCGCGGTGGAGATGGTGGACCAGGCGGTGGAGATGCGAATAAGTTTGGTTCCGGTAGTGCTGAGGAGGTTTCTTCATCATTGCCCAACGTGATTGTACTCGATGTTGGAGGAATGACTTGCGGGGGATGTGCAGCAAGTGTGAAGAGAATACTCGAAAATCAGCCACAAGTGTCATCTGCTAGTGTGAACCTCACAACAGAGACTGCAGTCATATGGCCCGTACCTGAGGTGAAAGATTCACCTCACTGGGAGAAGCAGTTGGGACAGACGCTTGCTAACCATCTAACTCAATGCGGTTTTGCATCTAGTCTTCGAGAGTCAGGAAGAGACAACATCTTCATGGTTTTTGAAAGGAAGATGGAAGAAAAGCACAATCGTTTAAAAGAGAGTGGTCGCAATCTCGTTTTCTCCTGGGCTTTGTGTGCCGTGTGTCTCCTTGGCCACATTTCTCATTTCTTTGGTGCTAAGGCCTCATGGATCCATGCATTTCATACCACTCAATTCCATCTATCATTGTGCTTATTTACATTACTTGGGCCTGGTCGTCAACTTATTCTTGATGGTATGAAAAGTCTTGTTAAAGGAGCTCCAAATATGAACACTTTAGTTGGTCTCGGAGCTTTATCATCCTTTACCGTCAGCTCATTGGCTGCCTTAATTCCGAAACTTGGTTGGAAGACTTTCTTTGAGGAACCAGTTATGTTAATAGCCTTTGTATTGTTAGGAAGGAACCTTGAACAGAGAGCTAAAATTAGAGCTGCGAGTGATATGACAGGACTTCTTAGTATTTTACCTTCAAAAGCTCGTCTAGTTGTTGATGGTGATACGCAAGAATTGGGTTCAACAGTTGAAATTCCTTGTTCCAGTCTTTCAATTGGAGATGAAATTATTGTACTTCCTGGGGACCGTGTTCCTGCTGATGGAGTTGTGAAATCTGGTAGAAGCATTGTGGATGAGTCTAGTTTCACTGGGGAGCCATTACCTGTTACCAAGTTACCTGGGAGCCAAGTTGCAGCAGGCACTATAAATCTTAATGGAACTCTTACAGTTGAGGTGCGTCGACCAGGCGGTGAGACTGCTATGGGAGATATTGTTCGTTTGGTAGAAGAGGCTCAAGGCCGGGAAGCTCCTGTTCAACAGTTAGCTGACAAGGTGTCTGGGCACTTCACTTATGGAGTAATGGCACTCTCTGCAGCAACATTTTTATTTTGGAGTCAATTTGGCTCACGAATTCTGCCTGCAGCTTTTTATCATGGAAGTTCAGTTTCATTGGCTCTGCAGCTTTCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGCTTAGCTACACCAACTGCAATGCTGGTTGGAACTTCATTAGGTGCGACTAAAGGATTACTTTTGCGTGGGGGAAATATCTTAGAGAAGTTCGCAATGGTGGATACTGTTGTCTTTGATAAAACCGGGACCTTGACGGTTGGGAAACCCATTGTGACAAAGGTGTTGGCAACTCCAAGATATGAGACAAATGTAGATTCGCAGATAAACTCACACGGCATTCATTCAGAAAATGAGATTCTCAAGTTTGCTGCTGCAGTGGAATCTAACACAGTTCACCCAGTTGGCAAGGCAATTGTGGAAGCTGCTCGAGCTGTTAATGGTCAGAATTTGAAGGTGGTTGAAGGAACGTTTATGGAAGAACCTGGTTCTGGCGCTGTTGCAGCTGTAGAAAACAAGATAATATCTGTTGGAACATTGGACTGGATTCAGAGGCATGGAGTTGTTGTCAATAATTTCCGAGAGATGGATGATCTCAAGGCTCAATCGGTAGTTTATGTTGGAATAGACAATATTCTTGCTGGTCTTATTTATTATGAGGATGGCATCAGGGAAGATGCTAGTCATGTTGTTGACACTTTATCTAGGCAAGGAATTAACACTTATATGTTGTCTGGGGACAAAAGGAGTAATGCTGAGTACGTTGCATCTCTTGTTGGAATTCCAAAAGAGAAGGTGCAATCTGGAGTTAAACCCCATGAAAAGAAGAAGTTTATTAGTGAACTTCAGGAGAATCGCAACATTGTAGCCATGGTTGGTGATGGAATCAACGATGCTGCTGCTTTGGCTACTGCAGATATTGGAATTGCAATGGGTGGGGGTGTTGGAGCTGCTAGTGAGGTGTCTCCTATTGTGTTAATGGGCAACAGACTCTCTCAGTTGCTTGATGCTTTGGAGCTTAGCAAGTTGACCATGAAGACCGTGAAGCAAAACCTTTGGTGGGCTTTTGGGTACAACATTGTTGGAATTCCAATTGCTGCAGGCGTCTTGCTTCCTATAACAGGGACTATACTCACTCCATCCATTGCGGGTGCCCTAATGGGTCTGAGTTCTATAGGAGTTATGGCGAACTCACTTCTTTTGAGATTAAGGTTTTCTCAGAACAGAAAAAAATCTCTAGAAGACCAGCAAAAGGAAAGGTAA 2784 45.44 MDSVFFGATGNVATCCVSRALNRKLSEIVRRKCIHGGDRARRFSCISSYLGLHGTVCSGSCSTSLRTLQVVLPSLRRRLQCVSSSSVSFASGGGNGGLGGKNGGGGRGGDGGPGGGDANKFGSGSAEEVSSSLPNVIVLDVGGMTCGGCAASVKRILENQPQVSSASVNLTTETAVIWPVPEVKDSPHWEKQLGQTLANHLTQCGFASSLRESGRDNIFMVFERKMEEKHNRLKESGRNLVFSWALCAVCLLGHISHFFGAKASWIHAFHTTQFHLSLCLFTLLGPGRQLILDGMKSLVKGAPNMNTLVGLGALSSFTVSSLAALIPKLGWKTFFEEPVMLIAFVLLGRNLEQRAKIRAASDMTGLLSILPSKARLVVDGDTQELGSTVEIPCSSLSIGDEIIVLPGDRVPADGVVKSGRSIVDESSFTGEPLPVTKLPGSQVAAGTINLNGTLTVEVRRPGGETAMGDIVRLVEEAQGREAPVQQLADKVSGHFTYGVMALSAATFLFWSQFGSRILPAAFYHGSSVSLALQLSCSVLVIACPCALGLATPTAMLVGTSLGATKGLLLRGGNILEKFAMVDTVVFDKTGTLTVGKPIVTKVLATPRYETNVDSQINSHGIHSENEILKFAAAVESNTVHPVGKAIVEAARAVNGQNLKVVEGTFMEEPGSGAVAAVENKIISVGTLDWIQRHGVVVNNFREMDDLKAQSVVYVGIDNILAGLIYYEDGIREDASHVVDTLSRQGINTYMLSGDKRSNAEYVASLVGIPKEKVQSGVKPHEKKKFISELQENRNIVAMVGDGINDAAALATADIGIAMGGGVGAASEVSPIVLMGNRLSQLLDALELSKLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPITGTILTPSIAGALMGLSSIGVMANSLLLRLRFSQNRKKSLEDQQKER 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2250213 2268590 - MC10g0277 Mch10g0339 677432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0339 927 ProSitePatterns Heavy-metal-associated domain. 141 170 IPR017969 GO:0046872(InterPro)
Mch10g0339 927 Pfam E1-E2 ATPase 370 564 - -
Mch10g0339 927 SUPERFAMILY Calcium ATPase, transmembrane domain M 339 579 IPR023298 -
Mch10g0339 927 SUPERFAMILY HAD-like 583 905 IPR036412 -
Mch10g0339 927 NCBIfam HAD-IC family P-type ATPase 387 609 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch10g0339 927 NCBIfam HAD-IC family P-type ATPase 633 889 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch10g0339 927 SFLD p-type atpase 568 849 IPR044492 -
Mch10g0339 927 ProSitePatterns E1-E2 ATPases phosphorylation site. 587 593 IPR018303 -
Mch10g0339 927 FunFam Copper-transporting ATPase PAA1 chloroplastic 596 730 - -
Mch10g0339 927 FunFam Copper-transporting ATPase 1, putative 356 478 - -
Mch10g0339 927 CDD HMA 138 183 IPR006121 GO:0046872(InterPro)
Mch10g0339 927 Gene3D - 136 209 - -
Mch10g0339 927 MobiDBLite consensus disorder prediction 96 127 - -
Mch10g0339 927 NCBIfam copper-translocating P-type ATPase 287 909 - -
Mch10g0339 927 CDD P-type_ATPase_Cu-like 238 909 - -
Mch10g0339 927 FunFam Copper-transporting ATPase PAA1, chloroplastic 135 210 - -
Mch10g0339 927 Gene3D - 596 730 IPR023299 GO:0000166(InterPro)
Mch10g0339 927 PANTHER ATP7, ISOFORM B 223 910 - GO:0005507(PANTHER)|GO:0016020(PANTHER)|GO:0043682(PANTHER)|GO:0055070(PANTHER)
Mch10g0339 927 Pfam haloacid dehalogenase-like hydrolase 581 813 - -
Mch10g0339 927 Coils Coil 903 923 - -
Mch10g0339 927 Gene3D - 576 849 IPR023214 -
Mch10g0339 927 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Mch10g0339 927 PRINTS P-type cation-transporting ATPase superfamily signature 822 834 - -
Mch10g0339 927 PRINTS P-type cation-transporting ATPase superfamily signature 585 599 - -
Mch10g0339 927 PRINTS P-type cation-transporting ATPase superfamily signature 799 818 - -
Mch10g0339 927 PRINTS P-type cation-transporting ATPase superfamily signature 744 754 - -
Mch10g0339 927 Gene3D - 356 478 - -
Mch10g0339 927 SUPERFAMILY Calcium ATPase, transduction domain A 386 474 IPR008250 -
Mch10g0339 927 Pfam Heavy-metal-associated domain 138 183 IPR006121 GO:0046872(InterPro)
Mch10g0339 927 SFLD C1.7: P-type atpase like 568 849 - -
Mch10g0339 927 SUPERFAMILY HMA, heavy metal-associated domain 136 185 IPR036163 GO:0046872(InterPro)
Mch10g0339 927 ProSiteProfiles Heavy-metal-associated domain profile. 135 209 IPR006121 GO:0046872(InterPro)
Mch10g0339 927 NCBIfam heavy metal translocating P-type ATPase 305 908 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Mch10g0339 927 ProSitePatterns Hypothetical cof family signature 2. 799 821 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0339 Mch-Chr10:2250213 Mch11g0455 Mch-Chr11:2842141 6.50E-197 dispersed
Mch9g0154 Mch-Chr9:1193848 Mch10g0339 Mch-Chr10:2250213 5.36E-06 dispersed
Mch10g0339 Mch-Chr10:2250213 Mch2g1310 Mch-Chr2:9270897 1.66E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0339 K17686 - csv:101214702 1550.41