Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0340 ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCCGGGAAGGGCAGGGGCAATCAATGCCCTGCCAGGTATGGATTCAGCCTAGTGAAAGACAGCGTACCGGCCTATCTACAAAAGCATCTGTTTCCTAATATACTGAAGGATGAGGAATTTTGGTCGAATCCCCGTAGCTCTATCTTTAAGGCTTATGAGAAAACAGACCAAGCAATACTCTCACACAGTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACAGCAATTTTGATAAACGGCCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGGGCAGTCCTTTCAAAAAAAGGGCAGGAATTACAAATGTCTATTGATCACGAACCAAACACTGAGCGAGGAAGTATCGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCGTTTGGCGACAAGAACCTCAAAACACACTTGCGATCTGATCCCGACATAAAGAATGCTGATATCGACTCTGACACCGAGCTTCTTATCCTAGCAAGTGATGGTCTATGGAAGGTCATGACGAACCAAGAAGCGGTGGATATAGCGAGAAGGACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAACAGAGGCACTGAAAAGGGAAAGCAAAGACGACATATCGATCATCGTAGTTCGTTTCAAAGGGTAA 750 46.13 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNQCPARYGFSLVKDSVPAYLQKHLFPNILKDEEFWSNPRSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQELQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNADIDSDTELLILASDGLWKVMTNQEAVDIARRTKDPQRAAKQLATEALKRESKDDISIIVVRFKG 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2274676 2280212 + MC10g_new0063 Mch10g0340 677433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0340 249 CDD PP2Cc 44 247 IPR001932 -
Mch10g0340 249 PANTHER PROTEIN PHOSPHATASE 44 245 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch10g0340 249 Gene3D - 36 249 IPR036457 -
Mch10g0340 249 FunFam Probable protein phosphatase 2C 39 35 248 - -
Mch10g0340 249 ProSiteProfiles PPM-type phosphatase domain profile. 16 247 IPR001932 -
Mch10g0340 249 SMART PP2C_4 8 245 IPR001932 -
Mch10g0340 249 Pfam Protein phosphatase 2C 45 240 IPR001932 -
Mch10g0340 249 SUPERFAMILY PP2C-like 44 248 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0340 Mch-Chr10:2274676 Mch11g0664 Mch-Chr11:4336020 3.34E-122 dispersed
Mch10g0340 Mch-Chr10:2274676 Mch4g0141 Mch-Chr4:940150 3.33E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0340 K17506 - csv:101214223 460.685