Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0380 ATGGGAAGAGGGAAAATAGTGATTCGAAGAATAGACAATTCAACGAGCAGACAAGTGACTTTCTCAAAGAGAAGAAGTGGGTTACTCAAAAAAGCTCGAGAACTTTCAATCTTGTGTGATGCTGAAGTTGGATTGATCATTTTTTCAAGCACTGGCAAGCTCTATGATTATTCCAGCACCAGCATAAGGTCGATTACCGAACGCTACAACAAGGTAAAAGAGGAGCAAAATCAGCTGATGAATTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTACCTTGAAGCAACAACTGCAGTACTTGCAAGAATGTCACAGACAATTGATGGGCGAAGAACTTTCAGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAACTGATGAAATTACTGAACTAAGACAGAAGGGGAATCAAATGCATCAAGAAAATCTGGAACTCTACAAGAAACTAGATATGATTCGTAAAGAAAATGCAGAACTGCAAATGAAGCATCAGGCTTATGGAGCACTGGAAGTGAATAAAACAAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTACCCCTGGTCCCGTCCATCTACAGCTAAGGCAGCCACAACCACAAAACAATGAAGCACCAATACCAGGGATAAAGCTGGGGTATGTTCTACCAATCTGTGCTTATGAC 738 40.65 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSTSIRSITERYNKVKEEQNQLMNSVSELQFWKREAATLKQQLQYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILTDEITELRQKGNQMHQENLELYKKLDMIRKENAELQMKHQAYGALEVNKTSSSSVHQFTITNRYSTPGPVHLQLRQPQPQNNEAPIPGIKLGYVLPICAYD 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2516375 2523493 - MC10g0311 Mch10g0380 677473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0380 246 Coils Coil 62 92 - -
Mch10g0380 246 Coils Coil 163 183 - -
Mch10g0380 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch10g0380 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mch10g0380 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch10g0380 246 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch10g0380 246 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0380 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0380 Mch-Chr10:2516375 Mch11g0724 Mch-Chr11:4832939 1.36E-75 dispersed
Mch10g0375 Mch-Chr10:2482103 Mch10g0380 Mch-Chr10:2516375 2.24E-28 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42431 PF01486 K-box 1.30E-26 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0380 K09264 - csv:101203098 400.979