Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0403 ATGAGGAAGAGCAGAGGCAGGCAGAAGGTGGAGATGGTGAAGATGCCTAATGAGAGCAACCTTCAGGTAACCTTTTCGAAGCGTCGATCTGGCCTCTTCAAGAAAGCTAGTGAGTTGTGCACGCTTTGTGGTGCCGAGATTGCCATCATCGTCTTCTCGCCGGGGAAGAAGGTGTTCTCTTTCGGCCACCCTTGTGTCGAGGCTCTGATTGAACGCTTTGTGACTCGAAACCCCCCGCCGAGTTCTGGTACGCTCCAGTTGATCGAGGCTCATCGAAATGCCAATGTTCGGGAACTAAATTCGCAGCTGACACAGGTGCTGAATCAACTAGAGATGGAGCGAAAACGAGGCGAAGAGTTAAACAAGCTGCGAAAGGCAAGCCAGGCACAATTTTGGTGGGAGCTCCCCATCGAAGAAATGGAAATGAATCAACTCGAGCAGCTCAAGACATCGTTGGAGGAGTTGAAGAAGAATGTCACACAACATGCTGATCGGATTTTGGTTCAAACCTCAAATGGCAACCCACCACCACAATACTTCCCGACTCCGTCGCCTGCAAACCCGAACCAACAAGGCGGCGTTTTCGTCGTGGATCCAAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTT 657 50.23 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNSQLTQVLNQLEMERKRGEELNKLRKASQAQFWWELPIEEMEMNQLEQLKTSLEELKKNVTQHADRILVQTSNGNPPPQYFPTPSPANPNQQGGVFVVDPKNMISHLPYNYGSYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2662183 2663013 - MC10g0330 Mch10g0403 677496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0403 219 Gene3D - 83 175 - -
Mch10g0403 219 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0403 219 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0403 219 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0403 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0403 219 Coils Coil 138 165 - -
Mch10g0403 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0403 219 Coils Coil 93 120 - -
Mch10g0403 219 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0403 219 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0403 219 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
Mch10g0403 219 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch10g0403 219 PANTHER MADS BOX PROTEIN 6 156 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch10g0403 219 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0403 Mch-Chr10:2662183 Mch10g1297 Mch-Chr10:10829899 4.29E-67 dispersed
Mch10g0403 Mch-Chr10:2662183 Mch1g2012 Mch-Chr1:19640793 2.89E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42432 PF00319 SRF-TF 3.50E-24 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0403 - - - 0.0