Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0404 ATGTCCCGCTCCCTCCTCCGAGCTTTCCCTTTCTCCTCCACCCTTCGCCAGAAGCCTCCTCAATTTCTTCCCACATTCCGCCGCATTTCCCATCTCCGCCGCGCCAAATCCATTTCCACGAACCACAGAGCCGTTTCCTCTTTTTCTGCTTCCGCCACTCACCAGCCTTCCTCCGTCGCCGAAACGCTCGCTCCCTGTTCGAATTCACAGTCGCCTCTCAAGGAGTCTCTTCGTTGGATCAATCGCACTGCGCTCTGCGGTGAACTGTCGGTTGACGACGTTGGTAAGCGGGTTCGGCTGTGTGGTTGGGTTGCCTTGCACAGGGTTCATGGTGGTCTGACGTTCCTCAATCTTAGAGACCACAGTGGTATTGTTCAGGTTACTACGCTCCCCAACGAGTTTCCAGACGCTCATTCGGCCGTTAACGACTTGAGGCTTGAGTATGTTGTTGCTGTAGAAGGAGTTGTACGTTCTCGGCCTGGCAATTCGATTAATGCGAAAATGAAAACTGGCTTGATAGAGGTTGCTGCAGAGCATGTTCAAATCTTAAATTCTGTTGGATCGAAGTTGCCCTTTTTAGTTACAACTGCTGAGGACACAAAGGATTCTGCTAAAGAGGAAATTCGACTGAGGTACCGGTACCTTGATCTGCGGAGGAAGCAAATGAATTTTAACATAATGCTTCGGCATAAAGTGGTGAAGCTCCTTCGAAGATATTTGGAGGATGTACATGGTTTTGTGGAGATTGAGACGCCAATACTTTCTAGATCTACTCCCGAAGGTGCTCGGGATTATCTGGTGCCCTCTAGAGTTCAGCCAGGAACATTTTATGCTTTGCCTCAAAGCCCACAGTTGTTTAAGCAAATGTTGATGGTGTCTGGTTTTGATAAATACTATCAAATAGCAAGGTGTTTCCGAGATGAAGACCTTAGAGCTGACAGACAACCTGAGTTTACACAACTTGATATGGAATTAGCATTTACAACATTGGAAGACATGCTTAGGCTCAATGAAGAATTGATTAGAAAGGTTTTTTGGGAAGTCAAAGGTGTTCAGCTGCCAAATCCTTTCCCGAGGCTTACCTATGCTGAAGCCATGAGTCGATATGGATCAGATAGGCCAGATACAAGATTTGATCTTCAATTACAAGATGTATCTGATATTCTTGCAGATTCTCCATTCAGGGTTTTTGCAGATGCCTTGTCTAGTGGCGGAATCATCAAAGTACTGTGTGTGCCCTCTGGTGCTAAAAGATATTCAAACACAGCTCTTAAAAAGGGTGACATTTATTCAGAGGCAATCAAATCTGGAGCAAAAGGATTACCTTTTCTGAAAGTTCTGGACGGCGGTGGCATTGAAGGGATTCCTGCCCTAGTATCAAGTTTGGATCCTGCAGGTAGAGAGGAATTTCTGAGAAGATGCTCTGCTGGACCTGGTGATCTAGTCTTGTTTGCCGTGGGTCATCGAGCATCGGTAAATAAAACTCTGGATAGGCTTCGACTATATGTAGCTAATGAACTGGGTTTGGTTGACCATTCTCGGCATTCAATTTTGTGGGTGACTGATTTCCCAATGTTTGAATGGAATGATCTAGAGCAACGACTCGAGGCCCTGCACCACCCTTTTACAGCTCCAAACCCTGAAGACGTTGATGATCTGCCCTCTGCTCGTGCTTTAGCTTATGATATGGTCTACAACGGAGTAGAGATTGGTGGAGGGAGTTTGAGAATTCATAAACGTGAAGTTCAAGAGAAGGTTTTGAAGATTGTGGGAATCTCTCCTGAACAGGCAGAAGCAAAGTTTGGATATCTATTGGAGGCATTAGACATGGGTGCCCCGCCTCACGGGGGCATTGCCTATGGGCTGGACAGATTGGTGATGTTATTAGCAGATGCAAATTCCATTAGGGATGTCATAGCTTTCCCAAAGACAACCACAGCACAATGTGCCCTCACAAAAGCTCCTTCAGAAGTGGATCCCCAGCAACTCAAAGATTTGTCATACCAGACCCAA 2013 46.25 MSRSLLRAFPFSSTLRQKPPQFLPTFRRISHLRRAKSISTNHRAVSSFSASATHQPSSVAETLAPCSNSQSPLKESLRWINRTALCGELSVDDVGKRVRLCGWVALHRVHGGLTFLNLRDHSGIVQVTTLPNEFPDAHSAVNDLRLEYVVAVEGVVRSRPGNSINAKMKTGLIEVAAEHVQILNSVGSKLPFLVTTAEDTKDSAKEEIRLRYRYLDLRRKQMNFNIMLRHKVVKLLRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTLEDMLRLNEELIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLQDVSDILADSPFRVFADALSSGGIIKVLCVPSGAKRYSNTALKKGDIYSEAIKSGAKGLPFLKVLDGGGIEGIPALVSSLDPAGREEFLRRCSAGPGDLVLFAVGHRASVNKTLDRLRLYVANELGLVDHSRHSILWVTDFPMFEWNDLEQRLEALHHPFTAPNPEDVDDLPSARALAYDMVYNGVEIGGGSLRIHKREVQEKVLKIVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLADANSIRDVIAFPKTTTAQCALTKAPSEVDPQQLKDLSYQTQ 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2664991 2672356 - MC10g0331 Mch10g0404 677497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0404 671 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 228 642 IPR006195 -
Mch10g0404 671 SUPERFAMILY Nucleic acid-binding proteins 82 184 IPR012340 -
Mch10g0404 671 Gene3D - 361 510 IPR004115 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)
Mch10g0404 671 Gene3D Bira Bifunctional Protein; Domain 2 200 666 IPR045864 -
Mch10g0404 671 SUPERFAMILY Class II aaRS and biotin synthetases 206 644 IPR045864 -
Mch10g0404 671 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 81 671 IPR004524 GO:0005524(InterPro)|GO:0016874(InterPro)
Mch10g0404 671 Pfam GAD domain 397 496 IPR029351 -
Mch10g0404 671 CDD AspRS_core 226 645 IPR047090 -
Mch10g0404 671 CDD EcAspRS_like_N 82 222 IPR047089 -
Mch10g0404 671 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 67 645 - GO:0004815(PANTHER)|GO:0005739(PANTHER)|GO:0006422(PANTHER)
Mch10g0404 671 PRINTS Aspartyl-tRNA synthetase signature 605 619 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch10g0404 671 PRINTS Aspartyl-tRNA synthetase signature 561 577 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch10g0404 671 PRINTS Aspartyl-tRNA synthetase signature 279 291 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch10g0404 671 PRINTS Aspartyl-tRNA synthetase signature 296 309 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch10g0404 671 SUPERFAMILY GAD domain-like 378 510 IPR004115 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)
Mch10g0404 671 Gene3D - 74 186 IPR012340 -
Mch10g0404 671 Pfam tRNA synthetases class II (D, K and N) 205 644 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Mch10g0404 671 NCBIfam aspartate--tRNA ligase 81 669 IPR004524 GO:0005524(InterPro)|GO:0016874(InterPro)
Mch10g0404 671 Pfam OB-fold nucleic acid binding domain 98 182 IPR004365 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0404 K01876 - - csv:101202872 1216.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0404 Mch-Chr10:2664991 Mch2g0015 Mch-Chr2:162116 1.08E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34