Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0406 ATGGCGGAGGTGAGTGCTATGATGATTCGTGCCCGCTGCAACTTCGTTGCCAAAAACCCGGTGTTAGATGTGAAGCATTCGAGGTTCGGTGTGCCGGTTCCATGTCGTACCATTTGGTGCAATCGGAGGAGGATGAAGGGGAAATTTGGAAATGGAGTGAAGGCGGCAATGCAGGTGGGTTTGGAGGATGAGGAGAGATTGAAGAGATTGGAGGCGACATTAGGGCTCGACGTAGTGTCGGAGAGGGAGTTGAAGGAGAAAGGGTTTTTGGGGATGAGGAAGACGAAGCTCGTATGTACGATTGGGCCCGCGTGTTCTGCGATTGAGGATTTGGAGAAATTGGCACTGGAAGGCATGAACATTGCGAGACTTAATATGTGCCACAACTCGAAGGAGTGGCACAGCGATGTGATTAGGAAGATCAAGAAGTTAAATGAGGAGAAAGGATTTTGTATTTCGGTAATGATCGATACTGAAGGAAGTCAGATTCATGTGGTTGATCATGGAGCTCCTTCCTCTGTTAAAGTAGAGGATGGCTCAATCTGGTTGTTTACTGCTGAGAAATTCGAGGGCTCTCGTCCATTCACTGTTCAGGCAAGCTATGAAGGCTTCTCTGAAGGTATCGAAGTGGGTGATTCAATTGTAATTGATGGGGGAATGGCAACCTTTGAAGTCATTGAAAAGATTGGGAACGATTTGAGCTGCAGGTGCACAGACCCTGGTTTATTTCTTCCTCGAGCAAAATGCAGCGTTTGGAGAGATGGGAGGCTTGTTGCGAGAAATCACGAGTCTCCCACGCTGCCAAGTAAGGATTGGTCCGACATTGAATTTGGCATTTCGGAAGGTGTCGACTTTATTGCTCTTTCCTTTGTGAACAGTGCAGACCCTGTCAAGCATCTAAAGAACTACCTCTCAACAAAATCACCAAAATCTGTAAGAGTACTGGCTAAGATTGAAAGCTTGGAGGCTCTGCAAAATCTGGAAGAAATTATAGAGGCTTCTGATGGAATCATGGTGGCTCGAGGGGATCTTGGGGTTGAAATTCCTCTCGAGCAGATACCAGCAGTCCAAGAGCAAATAACTAATGTCTGCAGGGAACTGAACAAACCAGTGATCATAGCTTCACAACTTCTAGAGTCGATGGTCGAATATCCTACTCCAACACGTGCTGAGGTTGCAGATGTTTCTGAGGCAGTTAGACAGTATGCTGATGCATTGATGCTATCTGGGGAGTCTGCCATAGGATCATATGGACAGAAAGCGCTTTCGGTTCTGCAGATGGCCAGCAGCCGAATGGAGTTGTGGAGTCGTGAAGAAAACAGAAAAAATGTTCTTCCCAAGCTTCAACTTGGGGAATCATTGCACGATCGCATTGCCGAGGAAATTTGCAACGCTGCTGCTCAATTGGCTAACAGACTTTCAGTAGACGCCATCTTCGTGCTCACCAAGCAAGGTCACATGGCATCTCTTCTTTCCCGCAACCGCCCGAGCCCGCCTGTATTTGCATTAACCGATAACGACAGCACGAGAATGGCCTTGAATCTACAATGGGGAGTGTTTCCTCTGCGCATTGACCTCTCAGACGACATCGAGGCAAACATTTCAAGAGGCATCGAGCTTGTGAAGTCGAAGGGGCTGGTCAAACAGGGGGACTCTGTGTTGGTGGTCTCAGAAATCTCTCCAGCTCGAGCTGCATCAATGGCGACACAGTCAATCCAGCTCAAAACCATCGTG 1734 47.87 MAEVSAMMIRARCNFVAKNPVLDVKHSRFGVPVPCRTIWCNRRRMKGKFGNGVKAAMQVGLEDEERLKRLEATLGLDVVSERELKEKGFLGMRKTKLVCTIGPACSAIEDLEKLALEGMNIARLNMCHNSKEWHSDVIRKIKKLNEEKGFCISVMIDTEGSQIHVVDHGAPSSVKVEDGSIWLFTAEKFEGSRPFTVQASYEGFSEGIEVGDSIVIDGGMATFEVIEKIGNDLSCRCTDPGLFLPRAKCSVWRDGRLVARNHESPTLPSKDWSDIEFGISEGVDFIALSFVNSADPVKHLKNYLSTKSPKSVRVLAKIESLEALQNLEEIIEASDGIMVARGDLGVEIPLEQIPAVQEQITNVCRELNKPVIIASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGSYGQKALSVLQMASSRMELWSREENRKNVLPKLQLGESLHDRIAEEICNAAAQLANRLSVDAIFVLTKQGHMASLLSRNRPSPPVFALTDNDSTRMALNLQWGVFPLRIDLSDDIEANISRGIELVKSKGLVKQGDSVLVVSEISPARAASMATQSIQLKTIV 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2680845 2684287 + MC10g0333 Mch10g0406 677499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0406 578 ProSitePatterns Pyruvate kinase active site signature. 312 324 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Mch10g0406 578 PRINTS Pyruvate kinase family signature 314 340 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 PRINTS Pyruvate kinase family signature 283 297 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 PRINTS Pyruvate kinase family signature 391 409 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 PRINTS Pyruvate kinase family signature 150 166 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 PRINTS Pyruvate kinase family signature 410 426 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 PRINTS Pyruvate kinase family signature 341 365 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 PRINTS Pyruvate kinase family signature 366 390 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 Gene3D - 161 265 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Mch10g0406 578 SUPERFAMILY PK beta-barrel domain-like 163 249 IPR011037 -
Mch10g0406 578 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 87 433 IPR015813 GO:0003824(InterPro)
Mch10g0406 578 NCBIfam pyruvate kinase 93 576 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 Gene3D - 433 559 IPR036918 -
Mch10g0406 578 Pfam Pyruvate kinase, barrel domain 92 421 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Mch10g0406 578 Gene3D - 93 432 IPR040442 -
Mch10g0406 578 PANTHER PYRUVATE KINASE 73 559 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0004743(PANTHER)|GO:0005737(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0030955(InterPro)
Mch10g0406 578 Pfam Pyruvate kinase, alpha/beta domain 460 560 IPR015795 -
Mch10g0406 578 SUPERFAMILY PK C-terminal domain-like 455 560 IPR036918 -
Mch10g0406 578 FunFam Pyruvate kinase 266 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0406 K00873 - - csv:101220786 1026.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0406 Mch-Chr10:2680845 Mch7g1025 Mch-Chr7:14412476 5.32E-208 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g773 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00959 Cam10g0982 Cec10g1013 . Clacu10g1004 Cmu10g1787 Cre10g1160 . . . . . . . . . . . . . . . . Sed13g0418 Cmo04g00460 Cmo16g00321 . . . . Cpe14g00251 Cpe01g00386 Bhi11g01099 Tan01g0602 Cmetu07g0067 . . Mch10g0406 . . . . . . . . Lsi03g01004 . . Cme07g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30