Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0420 ATGGGTGCTCCGAAGCAGAAATGGACTAGCCAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTCAAGCACGGAGCAGGAAAGTGGCGCACAATACTGAAAGATCCTGAATTTAGCAATGTTCTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGCGGTTCCCGAGAGAAGACCAGGTTGGCTCTTAAGAGGCAACATACTACTAAAAAGGATGAGATTATTGTGGCTCAAAGTACTGCTGTCCAAAGTGAAGATGAATTAGCAGATGCTAAGTCTGTTTCTCTTTCCTCGGATATCAAGCAGTTTTCTGGCCCAAACCGATCAAATGTAAGGTTGGTCAAATCTTTCATGGGTTTTCCTTCTTCTTTCTTCTCTCTTTTTCAGTTCTTGTTTGACAATCTTATAATTGAGGCAATTACTACCTTGAGGGAACCTGGTGGTTCTAATAAGACAGCTATTGCTTCGTATATAGAGGATCAATATTGGGCCCCTCCAGACTTCAAGAGGTCATTGTCAACGCAATTGAAGTATTTAATAGCTAGTGGTAAACTGGTTAAGGTTAAACGGAAATATAGGCTTGCTCCAACGGTGCCTTTATCAGAGAGGAGAAACTCTATGTTATTGTTGGAGGACCAGCAAAGAGCTTCTATTAGAGCTGACAAGGATGAAATGTGTACACTTGCAAAAGCTCAAATCGATTTAGAATTAGCCAAGATGAGAACCATGAGTTCCCAAGAGGCAGCAGCAGCTGCTGCTCGAGCGGTTGCAGAAGCTGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAGGCCGAGGCAGCTGAAGCCGACGCAGAAGCAGCACAATCATTTGCAGAAGCGGCAATGAAGACACTGAAAGGAAGAAATCTCCCAAAGATGGTAAAACTGTATTGTATTCATACTGTTGAACATGCTGCATTAATGTCTATCATCTCCCAATTAGACTGGGATTCTTTTAACCAGCATTGTTCTCATTTAAGCTTCACTCATGATCCATCATTCTTATGTGACCGTTTGACTTCGCGGTTAACAAATGTCTCAGAAACTCTAACCTTAACGCGCATTTCTTTTGGTAAACACTAG 1140 42.81 MGAPKQKWTSQEEAALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGCGSREKTRLALKRQHTTKKDEIIVAQSTAVQSEDELADAKSVSLSSDIKQFSGPNRSNVRLVKSFMGFPSSFFSLFQFLFDNLIIEAITTLREPGGSNKTAIASYIEDQYWAPPDFKRSLSTQLKYLIASGKLVKVKRKYRLAPTVPLSERRNSMLLLEDQQRASIRADKDEMCTLAKAQIDLELAKMRTMSSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMVKLYCIHTVEHAALMSIISQLDWDSFNQHCSHLSFTHDPSFLCDRLTSRLTNVSETLTLTRISFGKH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2779645 2783143 + MC10g0346 Mch10g0420 677513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0420 379 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mch10g0420 379 CDD SANT_TRF 6 56 - -
Mch10g0420 379 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mch10g0420 379 CDD H15 144 207 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch10g0420 379 SMART sant 4 59 IPR001005 -
Mch10g0420 379 FunFam Telomere repeat-binding factor 1 8 84 - -
Mch10g0420 379 SUPERFAMILY Homeodomain-like 2 62 IPR009057 -
Mch10g0420 379 FunFam Telomere repeat-binding factor 1 2 58 - -
Mch10g0420 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Mch10g0420 379 Gene3D - 2 59 - -
Mch10g0420 379 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 130 206 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch10g0420 379 Gene3D - 142 214 IPR036388 -
Mch10g0420 379 Pfam linker histone H1 and H5 family 143 199 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch10g0420 379 SUPERFAMILY Winged helix DNA-binding domain 143 213 IPR036390 -
Mch10g0420 379 SMART h15plus2 131 201 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch10g0420 379 FunFam Telomere repeat-binding factor 1 139 216 - -
Mch10g0420 379 Coils Coil 259 296 - -
Mch10g0420 379 PANTHER SINGLE MYB HISTONE 4 1 310 IPR044597 GO:0003691(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0420 Mch-Chr10:2779645 Mch1g1294 Mch-Chr1:15082711 1.04E-77 dispersed
Mch10g0420 Mch-Chr10:2779645 Mch6g2001 Mch-Chr6:22419526 1.13E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42433 PF00538 Linker_histone 1.70E-09 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0420 K09422 - csv:101218411 408.683