Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0420 ATGGGTGCTCCGAAGCAGAAATGGACTAGCCAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTCAAGCACGGAGCAGGAAAGTGGCGCACAATACTGAAAGATCCTGAATTTAGCAATGTTCTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGCGGTTCCCGAGAGAAGACCAGGTTGGCTCTTAAGAGGCAACATACTACTAAAAAGGATGAGATTATTGTGGCTCAAAGTACTGCTGTCCAAAGTGAAGATGAATTAGCAGATGCTAAGTCTGTTTCTCTTTCCTCGGATATCAAGCAGTTTTCTGGCCCAAACCGATCAAATGTAAGGTTGGTCAAATCTTTCATGGGTTTTCCTTCTTCTTTCTTCTCTCTTTTTCAGTTCTTGTTTGACAATCTTATAATTGAGGCAATTACTACCTTGAGGGAACCTGGTGGTTCTAATAAGACAGCTATTGCTTCGTATATAGAGGATCAATATTGGGCCCCTCCAGACTTCAAGAGGTCATTGTCAACGCAATTGAAGTATTTAATAGCTAGTGGTAAACTGGTTAAGGTTAAACGGAAATATAGGCTTGCTCCAACGGTGCCTTTATCAGAGAGGAGAAACTCTATGTTATTGTTGGAGGACCAGCAAAGAGCTTCTATTAGAGCTGACAAGGATGAAATGTGTACACTTGCAAAAGCTCAAATCGATTTAGAATTAGCCAAGATGAGAACCATGAGTTCCCAAGAGGCAGCAGCAGCTGCTGCTCGAGCGGTTGCAGAAGCTGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAGGCCGAGGCAGCTGAAGCCGACGCAGAAGCAGCACAATCATTTGCAGAAGCGGCAATGAAGACACTGAAAGGAAGAAATCTCCCAAAGATGGTAAAACTGTATTGTATTCATACTGTTGAACATGCTGCATTAATGTCTATCATCTCCCAATTAGACTGGGATTCTTTTAACCAGCATTGTTCTCATTTAAGCTTCACTCATGATCCATCATTCTTATGTGACCGTTTGACTTCGCGGTTAACAAATGTCTCAGAAACTCTAACCTTAACGCGCATTTCTTTTGGTAAACACTAG 1140 42.81 MGAPKQKWTSQEEAALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGCGSREKTRLALKRQHTTKKDEIIVAQSTAVQSEDELADAKSVSLSSDIKQFSGPNRSNVRLVKSFMGFPSSFFSLFQFLFDNLIIEAITTLREPGGSNKTAIASYIEDQYWAPPDFKRSLSTQLKYLIASGKLVKVKRKYRLAPTVPLSERRNSMLLLEDQQRASIRADKDEMCTLAKAQIDLELAKMRTMSSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMVKLYCIHTVEHAALMSIISQLDWDSFNQHCSHLSFTHDPSFLCDRLTSRLTNVSETLTLTRISFGKH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2779645 2783143 + MC10g0346 Mch10g0420 677513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0420 379 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mch10g0420 379 CDD SANT_TRF 6 56 - -
Mch10g0420 379 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mch10g0420 379 CDD H15 144 207 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch10g0420 379 SMART sant 4 59 IPR001005 -
Mch10g0420 379 FunFam Telomere repeat-binding factor 1 8 84 - -
Mch10g0420 379 SUPERFAMILY Homeodomain-like 2 62 IPR009057 -
Mch10g0420 379 FunFam Telomere repeat-binding factor 1 2 58 - -
Mch10g0420 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Mch10g0420 379 Gene3D - 2 59 - -
Mch10g0420 379 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 130 206 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch10g0420 379 Gene3D - 142 214 IPR036388 -
Mch10g0420 379 Pfam linker histone H1 and H5 family 143 199 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch10g0420 379 SUPERFAMILY Winged helix DNA-binding domain 143 213 IPR036390 -
Mch10g0420 379 SMART h15plus2 131 201 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch10g0420 379 FunFam Telomere repeat-binding factor 1 139 216 - -
Mch10g0420 379 Coils Coil 259 296 - -
Mch10g0420 379 PANTHER SINGLE MYB HISTONE 4 1 310 IPR044597 GO:0003691(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0420 K09422 - - csv:101218411 408.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0420 Mch-Chr10:2779645 Mch1g1294 Mch-Chr1:15082711 1.04E-77 dispersed
Mch10g0420 Mch-Chr10:2779645 Mch6g2001 Mch-Chr6:22419526 1.13E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g0420 . 1 313 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 2.8e-73 272.3
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 2.0e-63 239.6
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 1.5e-66 250.0
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 51.0 4.3e-58 221.9
Mch8g0985 . 1 276 Single Myb Histone (SMH) Gene Family AT1G17520 51.9 8.2e-70 260.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42433 PF00538 Linker_histone 1.70E-09 CL0123 Mch TF