Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0473 ATGGGGAGTGTCGAAGGAGACAGAACAGTAACGGGATTTGCCGCAAAAGACCCATCTGGGATTCTCTCCCCTTACACTTACACTCTCAGAGCCACCGGTCCGGAAGATGTTTTCATCAAAGTGATCTGCTGCGGAGTCTGCCACTCCGATCTTCACCAGATCAAAAACGACCTCGGAATGTCCAATTACCCCATGGTTCCTGGCCACGAAGTCGTCGGAGAAGTTGTGGAAGTCGGATCGGAAGTCGATCGGTTCAGAGTTGGGGAACTGGTCGGAGTTGGGTGCATCGTCGGATCCTGCTCCAAGTGCAGCCCCTGCAATTCCGACAAGGAGCAGTACTGTAACAAGAGGATCTGGAGCTACAACGACGTCTACCACGACGGCTGCCCCACCCAAGGCGGCTTCTCCTCCGCCATGGTCGTCGACCAGAAGTTTGTGGTGAGGATCCCGGAAGGGATGTCGCCGGAGCAGGCGGCGCCGCTGCTGTGCGCGGGAGTGACGGTGTACAGTCCGCTGAGCCATTTTGGGCTGAAACAGAGCGGGCTGCGCGGGGGGATTCTGGGGCTCGGCGGCGTCGGCCACATGGGGGTGAAAGTGGCGAAGGCGCTGGGCCACCACGTGACGGTCATAAGCTCGTCGGAGAAGAAGAGGGAGGAGGCGCTGGAGCATCTCGGCGCCGACGAGTACCTGGTAAGCTCCGACGCGGAGGAGATGCAACGCGCCGCCGACTCGCTGGATTACATCATCGACACAGTGCCGGTTTTTCATCCCCTCGAGCCGTATCTCTCGCTTCTGAAACTCGACGGCAAATTGATCTTGATGGGTGTCATAAACACTCCATTGAAATTCGTTTCCCCTCTCCTCATGCTCGGGAGGAAGACGATTACAGGGAGCTTCATCGGGAGCATGAAAGAGACGCAAGAAGTTCTGGATTTCTTCAAGGAAAAAGAGCTGAGCTCCATGATTGAAGTGATAAAGCTGGAGTACATAAACAAGGCGTTGGAGAGGCTGGAGAAGAACGATGTCAGATACAGGTTCGTCGTCGACGTCGCCGGAAGCAAGGTTCCTCAG 1071 56.4 MGSVEGDRTVTGFAAKDPSGILSPYTYTLRATGPEDVFIKVICCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSEVDRFRVGELVGVGCIVGSCSKCSPCNSDKEQYCNKRIWSYNDVYHDGCPTQGGFSSAMVVDQKFVVRIPEGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADEYLVSSDAEEMQRAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLKFVSPLLMLGRKTITGSFIGSMKETQEVLDFFKEKELSSMIEVIKLEYINKALERLEKNDVRYRFVVDVAGSKVPQ 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3081271 3082670 + MC10g0388 Mch10g0473 677566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0473 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491(InterPro)
Mch10g0473 357 PANTHER ALDEHYDE REDUCTASE 9 352 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Mch10g0473 357 SUPERFAMILY GroES-like 17 181 IPR011032 -
Mch10g0473 357 Gene3D - 164 320 - -
Mch10g0473 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Mch10g0473 357 FunFam probable cinnamyl alcohol dehydrogenase 13 170 - -
Mch10g0473 357 CDD CAD1 11 349 IPR047109 GO:0016616(InterPro)
Mch10g0473 357 Gene3D - 13 350 - -
Mch10g0473 357 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Mch10g0473 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 318 IPR036291 -
Mch10g0473 357 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Mch10g0473 357 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Mch10g0473 357 Pfam Alcohol dehydrogenase GroES-like domain 33 151 IPR013154 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0473 Mch-Chr10:3081271 Mch8g0892 Mch-Chr8:6402498 7.97E-16 dispersed
Mch11g0098 Mch-Chr11:637420 Mch10g0473 Mch-Chr10:3081271 2.06E-119 transposed
Mch1g1362 Mch-Chr1:15570869 Mch10g0473 Mch-Chr10:3081271 6.53E-125 transposed
Mch2g1704 Mch-Chr2:15623953 Mch10g0473 Mch-Chr10:3081271 5.63E-134 transposed
Mch6g2385 Mch-Chr6:25729871 Mch10g0473 Mch-Chr10:3081271 3.10E-102 transposed
Mch10g0473 Mch-Chr10:3081271 Mch4g0736 Mch-Chr4:4997541 5.88E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0473 K00083 - csv:101222395 622.468