Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0486 | ATGGCGGCTCAGGTGCAAGCTCAACCTCAGAATGCCATTTCGGGCATCAATCCGGCGGCGAATGGTGGGGCCAATCAGTTTGTGACTACGTCTTTGTATGTCGGAGATCTGGACTTGAATGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAAGTGGTATCGGTTCGGGTTTGCAGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCTAGAGCACTGGATGTGCTGAACTTTACCCCTCTTAATGGAAAGCCTATTAGGGTTATGTATTCTCACCGTGACCCAAGCATTCGGAAAAGTGGAGCTGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTTTACACGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGTCAGTCAAAAGGCTATGGTTTTGTGCAATTTGATAACGAGGATTCTGCTCAGAAAGCCATTGAGAAGTTGAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGCTGCTGACAAATCCAAATTTAATAATGTATTTGTGAAAAGTCTTTCTGAGACAACTACTGAAGAAGATTTAAACAAAGTTTTTTCTGAATTTGGGACAATCACTAGTATTGTGGTGATGAGGGATGCTGATGGCAAATCAAAATGCTTTGGATTTGTTAATTTTGAAAATGTTGACGATGCTGCTAGGGCAGTTGATGCTCTTAATGGGAAGGTATTTGAGGATAAGGAATGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTGAAACACCGATTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAACTTGTACATTAAAAATTTAGATGACAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTTCATTTGGCACTATCACGTCATGCAAGGTCATGCGTGACCCTAATGGAATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACTCCTGAAGAGGCATCTAGAGCTCTTTTGGAGATGAATGGCAAAATGGTCGTTAGCAAACCCTTGTATGTAGCACTTGCACAGAGGAAGGAAGATAGAAGAGCCAGGTTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTAGAATGCCAATGTATCCCCCTGGTGGTCCAGGTCTTGGACAACAATTGTTTTATGGTCAAGCTCCTCCTACAATCATTCCCTCTCAACCTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATGAGGCCCGGTGGAGGTCCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAATCTCAGCAGCCTGTTCCAATGATGCAACAACAGATGGTACCTAGAGGGCGTGTCTATCGCTATCCTCCAGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTCGCTGGAGGCATGTTTTCTGTTCCATATGACATGGGTGGTTTGCCGATGCGGGACGCGGCGCTCTCTCAACCTATCCCAATAGGTGCTCTGGCTTCTGCTCTAGCAAATGCTACTCCAGACCAGCAGAGAACAATGCTGGGGGAGAATCTTTACCCACTTGTGGAACAGTTGGAGCCCGACAATGCAGCCAAGGTAACCGGCATGCTCCTGGAGATGGACCAGACCGAGGTTTTACATTTACTCGAGTCGCCAGAGGCTTTGAAGGCCAAAGTAGCTGAGGCTATGGAGGTCTTGAGGAATGTGGCAGCAGCAGCTCAGCAGCAGCAAGCTGGCAACGCAGCTGATCAGCTAGCCTCTCTGTCGCTGACCGACAACCTCGTATCGTGA | 1965 | 46.36 | MAAQVQAQPQNAISGINPAANGGANQFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGAADKSKFNNVFVKSLSETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENVDDAARAVDALNGKVFEDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPMYPPGGPGLGQQLFYGQAPPTIIPSQPGFGYQQQLVPGMRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQSQQPVPMMQQQMVPRGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGLPMRDAALSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAAQQQQAGNAADQLASLSLTDNLVS | 654 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3159463 | 3164600 | + | MC10g_new0090 | Mch10g0486 | 677579 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0486 | 654 | SMART | rrm2_1 | 31 | 104 | IPR003954 | GO:0003676(InterPro) | |
Mch10g0486 | 654 | SMART | rrm2_1 | 313 | 385 | IPR003954 | GO:0003676(InterPro) | |
Mch10g0486 | 654 | SMART | rrm2_1 | 119 | 191 | IPR003954 | GO:0003676(InterPro) | |
Mch10g0486 | 654 | SMART | rrm2_1 | 210 | 282 | IPR003954 | GO:0003676(InterPro) | |
Mch10g0486 | 654 | CDD | RRM4_I_PABPs | 311 | 389 | - | - | |
Mch10g0486 | 654 | Gene3D | - | 119 | 191 | IPR012677 | - | |
Mch10g0486 | 654 | Pfam | RNA recognition motif | 120 | 188 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | Pfam | RNA recognition motif | 32 | 102 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | Pfam | RNA recognition motif | 314 | 382 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | Pfam | RNA recognition motif | 211 | 279 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 118 | 190 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 30 | 199 | IPR035979 | GO:0003676(InterPro) | |
Mch10g0486 | 654 | CDD | RRM3_I_PABPs | 208 | 287 | - | - | |
Mch10g0486 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 209 | 286 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | FunFam | Polyadenylate-binding protein | 548 | 630 | - | - | |
Mch10g0486 | 654 | MobiDBLite | consensus disorder prediction | 474 | 499 | - | - | |
Mch10g0486 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 30 | 108 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | FunFam | Polyadenylate-binding protein | 295 | 400 | - | - | |
Mch10g0486 | 654 | Gene3D | - | 294 | 398 | IPR012677 | - | |
Mch10g0486 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 312 | 389 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | FunFam | Polyadenylate-binding protein | 119 | 192 | - | - | |
Mch10g0486 | 654 | SMART | rrm1_1 | 31 | 104 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | SMART | rrm1_1 | 210 | 282 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | SMART | rrm1_1 | 119 | 191 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | SMART | rrm1_1 | 313 | 385 | IPR000504 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 209 | 392 | IPR035979 | GO:0003676(InterPro) | |
Mch10g0486 | 654 | Pfam | Poly-adenylate binding protein, unique domain | 559 | 624 | IPR002004 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 552 | 629 | IPR002004 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | Gene3D | - | 194 | 293 | IPR012677 | - | |
Mch10g0486 | 654 | Gene3D | - | 1 | 118 | IPR012677 | - | |
Mch10g0486 | 654 | SMART | poly_2 | 564 | 627 | IPR002004 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | CDD | RRM1_I_PABPs | 31 | 110 | IPR034364 | - | |
Mch10g0486 | 654 | FunFam | Polyadenylate-binding protein | 17 | 118 | - | - | |
Mch10g0486 | 654 | FunFam | Polyadenylate-binding protein | 199 | 294 | - | - | |
Mch10g0486 | 654 | SUPERFAMILY | PABC (PABP) domain | 493 | 645 | IPR036053 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | Coils | Coil | 614 | 634 | - | - | |
Mch10g0486 | 654 | CDD | RRM2_I_PABPs | 116 | 192 | IPR045305 | - | |
Mch10g0486 | 654 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 31 | 625 | IPR006515 | GO:0003723(InterPro) | |
Mch10g0486 | 654 | PANTHER | RNA BINDING PROTEIN | 26 | 211 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Mch10g0486 | 654 | Gene3D | - | 548 | 629 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0486 | Mch-Chr10:3159463 | Mch4g1917 | Mch-Chr4:21769451 | 1.00E-221 | dispersed | |
Mch4g2029 | Mch-Chr4:22560176 | Mch10g0486 | Mch-Chr10:3159463 | 5.14E-06 | transposed | |
Mch5g1681 | Mch-Chr5:17588101 | Mch10g0486 | Mch-Chr10:3159463 | 9.18E-157 | transposed | |
Mch7g0130 | Mch-Chr7:1604341 | Mch10g0486 | Mch-Chr10:3159463 | 1.67E-15 | transposed | |
Mch8g2079 | Mch-Chr8:23763892 | Mch10g0486 | Mch-Chr10:3159463 | 4.25E-10 | transposed | |
Mch10g0486 | Mch-Chr10:3159463 | Mch4g0706 | Mch-Chr4:4751196 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0486 | K13126 | - | csv:101219802 | 1135.94 |