Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0486 ATGGCGGCTCAGGTGCAAGCTCAACCTCAGAATGCCATTTCGGGCATCAATCCGGCGGCGAATGGTGGGGCCAATCAGTTTGTGACTACGTCTTTGTATGTCGGAGATCTGGACTTGAATGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAAGTGGTATCGGTTCGGGTTTGCAGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCTAGAGCACTGGATGTGCTGAACTTTACCCCTCTTAATGGAAAGCCTATTAGGGTTATGTATTCTCACCGTGACCCAAGCATTCGGAAAAGTGGAGCTGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTTTACACGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGTCAGTCAAAAGGCTATGGTTTTGTGCAATTTGATAACGAGGATTCTGCTCAGAAAGCCATTGAGAAGTTGAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGCTGCTGACAAATCCAAATTTAATAATGTATTTGTGAAAAGTCTTTCTGAGACAACTACTGAAGAAGATTTAAACAAAGTTTTTTCTGAATTTGGGACAATCACTAGTATTGTGGTGATGAGGGATGCTGATGGCAAATCAAAATGCTTTGGATTTGTTAATTTTGAAAATGTTGACGATGCTGCTAGGGCAGTTGATGCTCTTAATGGGAAGGTATTTGAGGATAAGGAATGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTGAAACACCGATTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAACTTGTACATTAAAAATTTAGATGACAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTTCATTTGGCACTATCACGTCATGCAAGGTCATGCGTGACCCTAATGGAATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACTCCTGAAGAGGCATCTAGAGCTCTTTTGGAGATGAATGGCAAAATGGTCGTTAGCAAACCCTTGTATGTAGCACTTGCACAGAGGAAGGAAGATAGAAGAGCCAGGTTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTAGAATGCCAATGTATCCCCCTGGTGGTCCAGGTCTTGGACAACAATTGTTTTATGGTCAAGCTCCTCCTACAATCATTCCCTCTCAACCTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATGAGGCCCGGTGGAGGTCCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAATCTCAGCAGCCTGTTCCAATGATGCAACAACAGATGGTACCTAGAGGGCGTGTCTATCGCTATCCTCCAGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTCGCTGGAGGCATGTTTTCTGTTCCATATGACATGGGTGGTTTGCCGATGCGGGACGCGGCGCTCTCTCAACCTATCCCAATAGGTGCTCTGGCTTCTGCTCTAGCAAATGCTACTCCAGACCAGCAGAGAACAATGCTGGGGGAGAATCTTTACCCACTTGTGGAACAGTTGGAGCCCGACAATGCAGCCAAGGTAACCGGCATGCTCCTGGAGATGGACCAGACCGAGGTTTTACATTTACTCGAGTCGCCAGAGGCTTTGAAGGCCAAAGTAGCTGAGGCTATGGAGGTCTTGAGGAATGTGGCAGCAGCAGCTCAGCAGCAGCAAGCTGGCAACGCAGCTGATCAGCTAGCCTCTCTGTCGCTGACCGACAACCTCGTATCGTGA 1965 46.36 MAAQVQAQPQNAISGINPAANGGANQFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGAADKSKFNNVFVKSLSETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENVDDAARAVDALNGKVFEDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPMYPPGGPGLGQQLFYGQAPPTIIPSQPGFGYQQQLVPGMRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQSQQPVPMMQQQMVPRGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGLPMRDAALSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAAQQQQAGNAADQLASLSLTDNLVS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3159463 3164600 + MC10g_new0090 Mch10g0486 677579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0486 654 SMART rrm2_1 31 104 IPR003954 GO:0003676(InterPro)
Mch10g0486 654 SMART rrm2_1 313 385 IPR003954 GO:0003676(InterPro)
Mch10g0486 654 SMART rrm2_1 119 191 IPR003954 GO:0003676(InterPro)
Mch10g0486 654 SMART rrm2_1 210 282 IPR003954 GO:0003676(InterPro)
Mch10g0486 654 CDD RRM4_I_PABPs 311 389 - -
Mch10g0486 654 Gene3D - 119 191 IPR012677 -
Mch10g0486 654 Pfam RNA recognition motif 120 188 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 Pfam RNA recognition motif 32 102 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 Pfam RNA recognition motif 314 382 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 Pfam RNA recognition motif 211 279 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676(InterPro)
Mch10g0486 654 CDD RRM3_I_PABPs 208 287 - -
Mch10g0486 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 FunFam Polyadenylate-binding protein 548 630 - -
Mch10g0486 654 MobiDBLite consensus disorder prediction 474 499 - -
Mch10g0486 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 FunFam Polyadenylate-binding protein 295 400 - -
Mch10g0486 654 Gene3D - 294 398 IPR012677 -
Mch10g0486 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 FunFam Polyadenylate-binding protein 119 192 - -
Mch10g0486 654 SMART rrm1_1 31 104 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 SMART rrm1_1 210 282 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 SMART rrm1_1 119 191 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 SMART rrm1_1 313 385 IPR000504 GO:0003723(InterPro)
Mch10g0486 654 SUPERFAMILY RNA-binding domain, RBD 209 392 IPR035979 GO:0003676(InterPro)
Mch10g0486 654 Pfam Poly-adenylate binding protein, unique domain 559 624 IPR002004 GO:0003723(InterPro)
Mch10g0486 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723(InterPro)
Mch10g0486 654 Gene3D - 194 293 IPR012677 -
Mch10g0486 654 Gene3D - 1 118 IPR012677 -
Mch10g0486 654 SMART poly_2 564 627 IPR002004 GO:0003723(InterPro)
Mch10g0486 654 CDD RRM1_I_PABPs 31 110 IPR034364 -
Mch10g0486 654 FunFam Polyadenylate-binding protein 17 118 - -
Mch10g0486 654 FunFam Polyadenylate-binding protein 199 294 - -
Mch10g0486 654 SUPERFAMILY PABC (PABP) domain 493 645 IPR036053 GO:0003723(InterPro)
Mch10g0486 654 Coils Coil 614 634 - -
Mch10g0486 654 CDD RRM2_I_PABPs 116 192 IPR045305 -
Mch10g0486 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 625 IPR006515 GO:0003723(InterPro)
Mch10g0486 654 PANTHER RNA BINDING PROTEIN 26 211 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Mch10g0486 654 Gene3D - 548 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0486 Mch-Chr10:3159463 Mch4g1917 Mch-Chr4:21769451 1.00E-221 dispersed
Mch4g2029 Mch-Chr4:22560176 Mch10g0486 Mch-Chr10:3159463 5.14E-06 transposed
Mch5g1681 Mch-Chr5:17588101 Mch10g0486 Mch-Chr10:3159463 9.18E-157 transposed
Mch7g0130 Mch-Chr7:1604341 Mch10g0486 Mch-Chr10:3159463 1.67E-15 transposed
Mch8g2079 Mch-Chr8:23763892 Mch10g0486 Mch-Chr10:3159463 4.25E-10 transposed
Mch10g0486 Mch-Chr10:3159463 Mch4g0706 Mch-Chr4:4751196 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0486 K13126 - csv:101219802 1135.94