Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0491 CCTGGGAGTGTTGAGCCCTTGGATTTGAGCGTACAGATTCCATACCATTTCAGGTGTCCCATTTCTCTCGAGCTCATGCGCGATCCCGTCACCGTCGCCACCGGCCAGACTTACGACCGTTCCAGTATTGAGGCCTGGGTGGCTACCGGAAATACTACCTGTCCGGTCACCAGGCTTCCGCTCTCCGACTTCACGCTCATCCCTAACCATACTCTCCGCCGCCTCATCCAGGATTGGTGCGTTGCGAATCGGTCTTATGGCGTTGAGCGGATTCCGACTCCCAAGCAACCGGCGGATCCGGCTCTGGTTCGGTCTCTGCTCGCACAGGCTTCGTCGAGGTCGTCCACTTCTCGCCTCTCGGCTCTGCGACGGTTGAAAGGACTCGCTCGTGACTCGGACAAGAATCGGTCGCTGATTTCCTCGCTGAACGCGCGTCAAATCCTTCTGGATATTGTGTTTACGAATTCCGATTCGGATTCGGATTCCCCGGATTTGAGCCGCGAATCGCTCGCGCTTCTTGTGATGTTGCCGCTTACGGAATCGGAGTGCGTTCTCGTTGCGTCTGATCCGGAGCGGATTGGTTATCTGTCGCATCTGCTCTTTGATCCCTCGATTGAAGTCCGGATCAACTCCGCCGCGCTGATTGAGATCGTCATTGCCGGAATTAGAGCGTCCGAGCTCCGAGCGGAGATTTGCAGTATCGATGAATTGTTCGAAGGCGTCGTCGAAATTCTCAGAGATCCAACGGCATATCCGCGCGCGCTCAAGGTCGGAGTTAAGGCCTTGTTCGCCCTCTGTCTAGTGAAGCAGACGAGGCACAAGGCGATTTCCGCCGGTGCCGCCGAGATACTCATCGACCGTTTCCCGAATTTGGAGAAGTACGACGCAGAGCGAGCCCTAGCGACTATCGAGCTCATTTGCCGAATTCCGGCCGGTTGCGCCGTGTTCGCCGCGCACGCGCTCACCGTGCCGCTGCTGGTGAAAGTGATTCTGAAGATCTCAGACAGAGCGACGGAATCGGCAGTTGGAGCTCTGGTGTCGCTGTGCTCGGCGTCGGAGGAAAACCACAGGGAGGCGGTGGCGGCGGGGATATTGACTCAGTTATTGTTGCTGGTACAGAGCGATTGCACAGACCGAGTTAAACGGAAATCGCAGCTGCTTCTGAAGCTTCTCCGAGATTCATGGCCGCAGGATTCCGTCGGAAATTCAAACGATTATGCTTGCAGTGAAATCGTGGTGCCGTTC 1245 56.47 PGSVEPLDLSVQIPYHFRCPISLELMRDPVTVATGQTYDRSSIEAWVATGNTTCPVTRLPLSDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPADPALVRSLLAQASSRSSTSRLSALRRLKGLARDSDKNRSLISSLNARQILLDIVFTNSDSDSDSPDLSRESLALLVMLPLTESECVLVASDPERIGYLSHLLFDPSIEVRINSAALIEIVIAGIRASELRAEICSIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAISAGAAEILIDRFPNLEKYDAERALATIELICRIPAGCAVFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENHREAVAAGILTQLLLLVQSDCTDRVKRKSQLLLKLLRDSWPQDSVGNSNDYACSEIVVPF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3187195 3188439 - MC10g0398 Mch10g0491 677584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0491 415 SUPERFAMILY RING/U-box 10 88 - -
Mch10g0491 415 Gene3D - 83 254 IPR011989 -
Mch10g0491 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 82 IPR013083 -
Mch10g0491 415 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch10g0491 415 Gene3D - 259 391 IPR011989 -
Mch10g0491 415 Pfam U-box domain 13 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch10g0491 415 SUPERFAMILY ARM repeat 102 391 IPR016024 -
Mch10g0491 415 SMART Ubox_2 16 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch10g0491 415 FunFam RING-type E3 ubiquitin transferase 7 89 - -
Mch10g0491 415 CDD RING-Ubox_PUB 14 66 IPR045210 -
Mch10g0491 415 PANTHER WDSAM1 PROTEIN 10 398 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0491 Mch-Chr10:3187195 Mch9g1350 Mch-Chr9:15825539 4.02E-55 dispersed
Mch10g0491 Mch-Chr10:3187195 Mch5g1539 Mch-Chr5:16414375 4.62E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0491 - - - 0.0