Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0513 ATGTCGTTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGATTTGAGGTCAGGCTGAGTGGCCATCATAGAGGAAAGTCCAATGCATCATCCTTAAATGATCTACACGACCAGCCTCCTGTCGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGCTTTATGATGTCATTCGTAGACTTGAAGAGAGTGAAAGCACATGGCCCACACGAAGGAATGTTGTTGCTTGTGCTGCAGTATGTCGTTCTTGGAGGATTATGTGCAAGGAGATAGTTAAAGGCCCGGAAATTTGTGGGAAGCTTACCTTCCCTGTATCACTGAAGCAGCCTGGTCCGCGCGATACATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACCTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAGCGTACGCGAAGAACTACTAGCACAGAGTACATTATCTCGATGGATGCGGATAATATTTCGAGATCAAGTAGCTCTTACGTCGGAAAACTGAGGTCGAATTTTCTTGGAACAAAATTTATTGTCTATGATACTCAACCTCCATACACTGCTGCCCCGCTTCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCCAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCACATAAGTTATGAACTAAACGTTTTAGGCACACGGGGACCCCGGAGAATGCATTGTATAATGCACTCAATACCAGTGGCAGCTCTCGATGCAGGCGGCAGCGTTCCAGGCCAACCAGAGCTCCTCCCTCCCAGCTGCCTCGACGACTCTTTTCGGAGTGCATCGTTCTCCAAAGCACTAGATCATTCCATGGAGTTCAGTAGCGCTAGATTTTCAGAAATTGGAAGGGCAGCCTTGGATGGCGAGGAGGAGGGGAAGATGAGACCTTTGGTTCTGAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGCGGGCGAGTAACCGTTGCATCAGTTAAGAACTTTCAGTTGATCGCAGCAACACAGCCAGCCGCTGGCGCTCCAACGCCATCCCAACCAGGCCCCCCAGAGCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTATCGATATCCGCTCTCCGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 48.64 MSFRSIVRDVRDSIGSLSRRGFEVRLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESESTWPTRRNVVACAAVCRSWRIMCKEIVKGPEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSSYVGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGSVPGQPELLPPSCLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGEEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3356046 3359830 - MC10g0418 Mch10g0513 677606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0513 428 Gene3D - 49 101 - -
Mch10g0513 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Mch10g0513 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Mch10g0513 428 FunFam Tubby-like F-box protein 49 102 - -
Mch10g0513 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Mch10g0513 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Mch10g0513 428 FunFam Tubby-like F-box protein 111 428 - -
Mch10g0513 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Mch10g0513 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Mch10g0513 428 Pfam Tub family 115 423 IPR000007 -
Mch10g0513 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Mch10g0513 428 CDD F-box_AtTLP-like 54 98 - -
Mch10g0513 428 PANTHER TUBBY-RELATED 44 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0513 Mch-Chr10:3356046 Mch11g1391 Mch-Chr11:10006150 7.57E-244 dispersed
Mch10g0513 Mch-Chr10:3356046 Mch10g0790 Mch-Chr10:5496465 2.30E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42440 PF01167 Tub 2.60E-116 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0513 K19600 - csv:101216314 832.402