Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0513 ATGTCGTTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGATTTGAGGTCAGGCTGAGTGGCCATCATAGAGGAAAGTCCAATGCATCATCCTTAAATGATCTACACGACCAGCCTCCTGTCGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGCTTTATGATGTCATTCGTAGACTTGAAGAGAGTGAAAGCACATGGCCCACACGAAGGAATGTTGTTGCTTGTGCTGCAGTATGTCGTTCTTGGAGGATTATGTGCAAGGAGATAGTTAAAGGCCCGGAAATTTGTGGGAAGCTTACCTTCCCTGTATCACTGAAGCAGCCTGGTCCGCGCGATACATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACCTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAGCGTACGCGAAGAACTACTAGCACAGAGTACATTATCTCGATGGATGCGGATAATATTTCGAGATCAAGTAGCTCTTACGTCGGAAAACTGAGGTCGAATTTTCTTGGAACAAAATTTATTGTCTATGATACTCAACCTCCATACACTGCTGCCCCGCTTCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCCAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCACATAAGTTATGAACTAAACGTTTTAGGCACACGGGGACCCCGGAGAATGCATTGTATAATGCACTCAATACCAGTGGCAGCTCTCGATGCAGGCGGCAGCGTTCCAGGCCAACCAGAGCTCCTCCCTCCCAGCTGCCTCGACGACTCTTTTCGGAGTGCATCGTTCTCCAAAGCACTAGATCATTCCATGGAGTTCAGTAGCGCTAGATTTTCAGAAATTGGAAGGGCAGCCTTGGATGGCGAGGAGGAGGGGAAGATGAGACCTTTGGTTCTGAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGCGGGCGAGTAACCGTTGCATCAGTTAAGAACTTTCAGTTGATCGCAGCAACACAGCCAGCCGCTGGCGCTCCAACGCCATCCCAACCAGGCCCCCCAGAGCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTATCGATATCCGCTCTCCGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 48.64 MSFRSIVRDVRDSIGSLSRRGFEVRLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESESTWPTRRNVVACAAVCRSWRIMCKEIVKGPEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSSYVGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGSVPGQPELLPPSCLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGEEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3356046 3359830 - MC10g0418 Mch10g0513 677606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0513 428 Gene3D - 49 101 - -
Mch10g0513 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Mch10g0513 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Mch10g0513 428 FunFam Tubby-like F-box protein 49 102 - -
Mch10g0513 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Mch10g0513 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mch10g0513 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Mch10g0513 428 FunFam Tubby-like F-box protein 111 428 - -
Mch10g0513 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Mch10g0513 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Mch10g0513 428 Pfam Tub family 115 423 IPR000007 -
Mch10g0513 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Mch10g0513 428 CDD F-box_AtTLP-like 54 98 - -
Mch10g0513 428 PANTHER TUBBY-RELATED 44 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0513 K19600 - - csv:101216314 832.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0513 Mch-Chr10:3356046 Mch11g1391 Mch-Chr11:10006150 7.57E-244 dispersed
Mch10g0513 Mch-Chr10:3356046 Mch10g0790 Mch-Chr10:5496465 2.30E-158 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1391 . 1 432 TUB Transcription Factor Family AT1G76900 72.8 3.5e-176 614.8
Mch10g0513 . 1 429 TUB Transcription Factor Family AT1G76900 69.9 3.8e-170 594.7
Mch4g1886 . 1 432 TUB Transcription Factor Family AT1G76900 70.1 6.6e-167 583.9
Mch7g1139 . 13 387 TUB Transcription Factor Family AT1G76900 52.0 2.6e-118 422.5
Mch10g0790 . 1 417 TUB Transcription Factor Family AT1G76900 51.5 2.6e-118 422.5
Mch5g0669 . 3 389 TUB Transcription Factor Family AT1G76900 50.3 2.0e-110 396.4
Mch10g0513 . 174 429 TUB Transcription Factor Family AT1G25280 74.3 4.4e-102 367.9
Mch11g1391 . 173 432 TUB Transcription Factor Family AT1G25280 69.6 1.8e-95 345.9
Mch4g1886 . 175 432 TUB Transcription Factor Family AT1G25280 69.5 1.9e-89 325.9
Mch10g0790 . 179 417 TUB Transcription Factor Family AT1G25280 57.1 3.1e-71 265.4
Mch5g0669 . 154 389 TUB Transcription Factor Family AT1G25280 54.1 2.6e-70 262.3
Mch7g1139 . 154 387 TUB Transcription Factor Family AT1G25280 54.5 2.9e-69 258.8
Mch11g0176 . 179 410 TUB Transcription Factor Family AT1G25280 53.6 2.7e-67 252.3
Mch1g1508 . 176 414 TUB Transcription Factor Family AT1G25280 51.5 1.5e-62 236.5
Mch7g1139 . 98 387 TUB Transcription Factor Family AT5G18680 62.6 7.8e-100 360.5
Mch5g0669 . 98 389 TUB Transcription Factor Family AT5G18680 63.7 2.8e-97 352.1
Mch11g1391 . 112 432 TUB Transcription Factor Family AT5G18680 52.6 9.2e-85 310.5
Mch4g1886 . 112 432 TUB Transcription Factor Family AT5G18680 51.8 6.6e-83 304.3
Mch10g0513 . 113 429 TUB Transcription Factor Family AT5G18680 53.3 6.6e-83 304.3
Mch10g0790 . 117 417 TUB Transcription Factor Family AT5G18680 52.3 1.7e-78 289.7
Mch11g0176 . 115 410 TUB Transcription Factor Family AT5G18680 50.5 5.6e-74 274.6
Mch10g0790 . 1 416 TUB Transcription Factor Family AT2G18280 62.6 5.8e-143 504.2
Mch1g1508 . 1 414 TUB Transcription Factor Family AT2G18280 60.3 1.1e-133 473.4
Mch11g0176 . 1 409 TUB Transcription Factor Family AT2G18280 57.5 3.5e-124 441.8
Mch11g1391 . 1 431 TUB Transcription Factor Family AT2G18280 53.1 3.8e-118 421.8
Mch10g0513 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 3.2e-117 418.7
Mch7g1139 . 1 386 TUB Transcription Factor Family AT2G18280 54.1 1.5e-114 409.8
Mch4g1886 . 1 431 TUB Transcription Factor Family AT2G18280 52.6 4.3e-114 408.3
Mch5g0669 . 1 388 TUB Transcription Factor Family AT2G18280 52.5 6.2e-113 404.4
Mch10g1052 . 52 385 TUB Transcription Factor Family AT2G18280 52.6 7.7e-95 344.4
Mch5g0669 . 1 389 TUB Transcription Factor Family AT2G47900 68.5 2.4e-160 562.0
Mch7g1139 . 1 387 TUB Transcription Factor Family AT2G47900 68.3 7.0e-160 560.5
Mch11g1391 . 1 432 TUB Transcription Factor Family AT2G47900 54.7 2.8e-132 468.8
Mch10g0513 . 1 429 TUB Transcription Factor Family AT2G47900 55.8 8.9e-131 463.8
Mch4g1886 . 1 432 TUB Transcription Factor Family AT2G47900 55.7 1.6e-127 453.0
Mch10g0790 . 1 417 TUB Transcription Factor Family AT2G47900 55.7 6.9e-123 437.6
Mch11g0176 . 10 410 TUB Transcription Factor Family AT2G47900 56.0 1.6e-116 416.4
Mch1g1508 . 1 414 TUB Transcription Factor Family AT2G47900 52.6 3.8e-113 405.2
Mch10g1052 . 52 385 TUB Transcription Factor Family AT2G47900 51.0 9.6e-101 364.0
Mch9g0482 . 60 277 TUB Transcription Factor Family AT1G16070 58.6 2.2e-67 252.7
Mch11g1391 . 67 432 TUB Transcription Factor Family AT1G43640 71.9 1.5e-150 529.3
Mch10g0513 . 66 429 TUB Transcription Factor Family AT1G43640 68.4 1.4e-146 516.2
Mch4g1886 . 65 432 TUB Transcription Factor Family AT1G43640 65.0 1.1e-137 486.5
Mch7g1139 . 49 387 TUB Transcription Factor Family AT1G43640 52.5 6.1e-107 384.4
Mch5g0669 . 49 389 TUB Transcription Factor Family AT1G43640 53.2 6.8e-106 380.9
Mch10g0790 . 70 417 TUB Transcription Factor Family AT1G43640 50.4 5.6e-100 361.3
Mch11g0176 . 34 410 TUB Transcription Factor Family AT1G47270 62.9 1.2e-132 469.9
Mch10g0790 . 36 417 TUB Transcription Factor Family AT1G47270 58.3 1.6e-124 443.0
Mch1g1508 . 33 414 TUB Transcription Factor Family AT1G47270 58.5 1.5e-122 436.4
Mch10g0513 . 1 429 TUB Transcription Factor Family AT1G47270 53.4 3.5e-116 415.2
Mch11g1391 . 31 432 TUB Transcription Factor Family AT1G47270 53.1 4.7e-113 404.8
Mch4g1886 . 48 432 TUB Transcription Factor Family AT1G47270 54.3 3.4e-111 398.7
Mch7g1139 . 1 387 TUB Transcription Factor Family AT1G47270 50.6 3.2e-109 392.1
Mch5g0669 . 1 389 TUB Transcription Factor Family AT1G47270 50.4 8.0e-105 377.5
Mch10g1052 . 49 385 TUB Transcription Factor Family AT1G53320 78.5 1.0e-157 553.1
Mch10g0790 . 42 417 TUB Transcription Factor Family AT1G53320 53.2 7.3e-103 370.9
Mch7g1139 . 33 387 TUB Transcription Factor Family AT1G53320 51.0 2.4e-101 365.9
Mch5g0669 . 33 389 TUB Transcription Factor Family AT1G53320 50.8 4.2e-98 355.1
Mch10g0513 . 54 429 TUB Transcription Factor Family AT1G53320 50.1 1.9e-95 346.3
Mch5g0669 . 98 389 TUB Transcription Factor Family AT3G06380 65.4 3.7e-99 358.2
Mch7g1139 . 98 387 TUB Transcription Factor Family AT3G06380 63.6 6.6e-96 347.4
Mch10g0513 . 117 429 TUB Transcription Factor Family AT3G06380 53.7 8.4e-83 303.9
Mch4g1886 . 116 432 TUB Transcription Factor Family AT3G06380 50.2 1.5e-79 293.1
Mch11g1391 . 116 432 TUB Transcription Factor Family AT3G06380 50.9 1.3e-78 290.0
Mch10g0790 . 121 417 TUB Transcription Factor Family AT3G06380 53.7 1.6e-78 289.7
Mch1g1508 . 121 414 TUB Transcription Factor Family AT3G06380 52.3 1.3e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42440 PF01167 Tub 2.60E-116 CL0395 Mch TF