Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0518 | ATGGAGATTGATCTGTCACTGAAAATAGATCATCACAAAGGAGAGTATTGGAAAGAAAAAACTCAGCAAAAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATGATCAAGAAATAATGGAAAAAATGGTGGAAGAAGCTGTTGTTGAAGCTGATCATCACCCTGATCTTGCTGCCTCTAGTTTGAAAGTTTTCTTGCCACACAACATTAATGGAGGAGAGATTTCAGAGTTGCAGACGGAGATGAATCGCATGAAGGAAGAAAATAAGCTTCTGAGAAAAGCAGTTGAACAAACAATGAAAGATTACTATGATCTTGAAATGAAAATTGCTGTCATCCAACAAAACAACCTCCACAAAAAGGACTCTCGTAGCTTTCTACCATTCAACAAAAGCCATGATGTACCGAAAACAGACCTTGAACTTAGAGAGATGGCGAAGAAGAGACGAGTAATTCGGTCGCCATCGAAAGACGACGGAATGAGAGAGAGCGAACTAGGGTTATCATTAGGACTTCACACAAACAGTAGCACAGCTGATTTAGAGCAACAAGATGACCAAAGGGAGGGAGAAGAGAGAGACAAGAAGAAGCAGGAAGATTTAAGAGTACCCAACTTCAACTCAGTCCAAAACAAGCCTCAAAGGCCTGAGTTGCAAGGAATTGCACCCCCACATAACAGAAAAGCTAGGGTTTCTGTGCGAGCAAGATGTGAAGCTGCCACTATGAATGATGGTTGCCAATGGAGGAAATATGGTCAGAAAATTGCTAAAGGGAATCCATGCCCTCGAGCCTATTATCGTTGCACAGTTGCACCAGGATGCCCAGTTAGAAAGCAGGTACAAAGATGTTTGGAAGACATGTCGATTCTGATAACAACGTACGAAGGAACACACAACCATCCACTCCCTGTTGGAGCCACAGCCATGGCTTCCATAGCCTCAGCACCACCTTCCTCTTCTTCTTCCTTCATGTTCTTAAACTCTCTTCCAAACCCTAATATTAATATCTTGAATTCCTCTTCATATTCTACAAACCCTAATCTCTACCCCTCACCCTCCAATAATTGGATCAACCCCTCTCATTCTTATTACCACACCAACAATCATTTTCAGCCTCATGATCTTTTGAAACCGTCCGAAGATCACAAGCCCCCGTTGACGCCAGAGAGCGTCTCCGCCATTGCTTCCGACCCCAAGTTTCGAGTCGCGGTCGCAGCCGCCATTTCGTCGCTCATTAACAAAGACGGCCAGCATCAGGACGGCGGCGGAGAAAAGAAGAAGGAAATGGGGTTCGTTGTGGACTAA | 1323 | 43.69 | MEIDLSLKIDHHKGEYWKEKTQQKDEEEEEEEEEEEEEEAYDQEIMEKMVEEAVVEADHHPDLAASSLKVFLPHNINGGEISELQTEMNRMKEENKLLRKAVEQTMKDYYDLEMKIAVIQQNNLHKKDSRSFLPFNKSHDVPKTDLELREMAKKRRVIRSPSKDDGMRESELGLSLGLHTNSSTADLEQQDDQREGEERDKKKQEDLRVPNFNSVQNKPQRPELQGIAPPHNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASIASAPPSSSSSFMFLNSLPNPNINILNSSSYSTNPNLYPSPSNNWINPSHSYYHTNNHFQPHDLLKPSEDHKPPLTPESVSAIASDPKFRVAVAAAISSLINKDGQHQDGGGEKKKEMGFVVD | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3383563 | 3387947 | - | MC10g_new0099 | Mch10g0518 | 677611 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0518 | 440 | SMART | WRKY_cls | 248 | 308 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch10g0518 | 440 | SUPERFAMILY | WRKY DNA-binding domain | 241 | 309 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch10g0518 | 440 | Coils | Coil | 81 | 108 | - | - | |
Mch10g0518 | 440 | Coils | Coil | 187 | 207 | - | - | |
Mch10g0518 | 440 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 29 | 424 | IPR044810 | GO:0003700(InterPro) | |
Mch10g0518 | 440 | FunFam | probable WRKY transcription factor 31 | 233 | 310 | - | - | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 135 | 170 | - | - | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 424 | 440 | - | - | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 188 | 208 | - | - | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 135 | 233 | - | - | |
Mch10g0518 | 440 | ProSiteProfiles | WRKY domain profile. | 243 | 309 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch10g0518 | 440 | Gene3D | WRKY domain | 233 | 310 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch10g0518 | 440 | Pfam | WRKY DNA -binding domain | 249 | 307 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 374 | 393 | - | - | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 420 | 440 | - | - | |
Mch10g0518 | 440 | MobiDBLite | consensus disorder prediction | 25 | 42 | - | - | |
Mch10g0518 | 440 | Coils | Coil | 17 | 47 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0518 | Mch-Chr10:3383563 | Mch1g1738 | Mch-Chr1:17926845 | 1.74E-40 | dispersed | |
Mch10g0518 | Mch-Chr10:3383563 | Mch6g0215 | Mch-Chr6:1447524 | 5.43E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42441 | PF03106 | WRKY | 1.70E-24 | CL0274 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0518 | - | - | - | 0.0 |