Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0518 ATGGAGATTGATCTGTCACTGAAAATAGATCATCACAAAGGAGAGTATTGGAAAGAAAAAACTCAGCAAAAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATGATCAAGAAATAATGGAAAAAATGGTGGAAGAAGCTGTTGTTGAAGCTGATCATCACCCTGATCTTGCTGCCTCTAGTTTGAAAGTTTTCTTGCCACACAACATTAATGGAGGAGAGATTTCAGAGTTGCAGACGGAGATGAATCGCATGAAGGAAGAAAATAAGCTTCTGAGAAAAGCAGTTGAACAAACAATGAAAGATTACTATGATCTTGAAATGAAAATTGCTGTCATCCAACAAAACAACCTCCACAAAAAGGACTCTCGTAGCTTTCTACCATTCAACAAAAGCCATGATGTACCGAAAACAGACCTTGAACTTAGAGAGATGGCGAAGAAGAGACGAGTAATTCGGTCGCCATCGAAAGACGACGGAATGAGAGAGAGCGAACTAGGGTTATCATTAGGACTTCACACAAACAGTAGCACAGCTGATTTAGAGCAACAAGATGACCAAAGGGAGGGAGAAGAGAGAGACAAGAAGAAGCAGGAAGATTTAAGAGTACCCAACTTCAACTCAGTCCAAAACAAGCCTCAAAGGCCTGAGTTGCAAGGAATTGCACCCCCACATAACAGAAAAGCTAGGGTTTCTGTGCGAGCAAGATGTGAAGCTGCCACTATGAATGATGGTTGCCAATGGAGGAAATATGGTCAGAAAATTGCTAAAGGGAATCCATGCCCTCGAGCCTATTATCGTTGCACAGTTGCACCAGGATGCCCAGTTAGAAAGCAGGTACAAAGATGTTTGGAAGACATGTCGATTCTGATAACAACGTACGAAGGAACACACAACCATCCACTCCCTGTTGGAGCCACAGCCATGGCTTCCATAGCCTCAGCACCACCTTCCTCTTCTTCTTCCTTCATGTTCTTAAACTCTCTTCCAAACCCTAATATTAATATCTTGAATTCCTCTTCATATTCTACAAACCCTAATCTCTACCCCTCACCCTCCAATAATTGGATCAACCCCTCTCATTCTTATTACCACACCAACAATCATTTTCAGCCTCATGATCTTTTGAAACCGTCCGAAGATCACAAGCCCCCGTTGACGCCAGAGAGCGTCTCCGCCATTGCTTCCGACCCCAAGTTTCGAGTCGCGGTCGCAGCCGCCATTTCGTCGCTCATTAACAAAGACGGCCAGCATCAGGACGGCGGCGGAGAAAAGAAGAAGGAAATGGGGTTCGTTGTGGACTAA 1323 43.69 MEIDLSLKIDHHKGEYWKEKTQQKDEEEEEEEEEEEEEEAYDQEIMEKMVEEAVVEADHHPDLAASSLKVFLPHNINGGEISELQTEMNRMKEENKLLRKAVEQTMKDYYDLEMKIAVIQQNNLHKKDSRSFLPFNKSHDVPKTDLELREMAKKRRVIRSPSKDDGMRESELGLSLGLHTNSSTADLEQQDDQREGEERDKKKQEDLRVPNFNSVQNKPQRPELQGIAPPHNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASIASAPPSSSSSFMFLNSLPNPNINILNSSSYSTNPNLYPSPSNNWINPSHSYYHTNNHFQPHDLLKPSEDHKPPLTPESVSAIASDPKFRVAVAAAISSLINKDGQHQDGGGEKKKEMGFVVD 440
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 3383563 3387947 - MC10g_new0099 Mch10g0518 677611
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0518 440 SMART WRKY_cls 248 308 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0518 440 SUPERFAMILY WRKY DNA-binding domain 241 309 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0518 440 Coils Coil 81 108 - -
Mch10g0518 440 Coils Coil 187 207 - -
Mch10g0518 440 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 29 424 IPR044810 GO:0003700(InterPro)
Mch10g0518 440 FunFam probable WRKY transcription factor 31 233 310 - -
Mch10g0518 440 MobiDBLite consensus disorder prediction 135 170 - -
Mch10g0518 440 MobiDBLite consensus disorder prediction 424 440 - -
Mch10g0518 440 MobiDBLite consensus disorder prediction 1 24 - -
Mch10g0518 440 MobiDBLite consensus disorder prediction 188 208 - -
Mch10g0518 440 MobiDBLite consensus disorder prediction 1 42 - -
Mch10g0518 440 MobiDBLite consensus disorder prediction 135 233 - -
Mch10g0518 440 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0518 440 Gene3D WRKY domain 233 310 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0518 440 Pfam WRKY DNA -binding domain 249 307 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0518 440 MobiDBLite consensus disorder prediction 374 393 - -
Mch10g0518 440 MobiDBLite consensus disorder prediction 420 440 - -
Mch10g0518 440 MobiDBLite consensus disorder prediction 25 42 - -
Mch10g0518 440 Coils Coil 17 47 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0518 Mch-Chr10:3383563 Mch1g1738 Mch-Chr1:17926845 1.74E-40 dispersed
Mch10g0518 Mch-Chr10:3383563 Mch6g0215 Mch-Chr6:1447524 5.43E-43 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42441 PF03106 WRKY 1.70E-24 CL0274 Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0518 - - - 0.0