Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0543 TTCAAGATTCAGGAGCTAGACAAGGCAACTGATAATTTTTCTCCAAAAAACTTCATTGGGAGAGGTGGGTTTGGCTTAGTTTACAAAGGGACATTACCTGATGGAAGTGTGGTGGCAGTAAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCAGAGTTTTGCAATGAGGTTGAAATAATCAGTAATTTGAAGCATAGAAATCTTGTTCCACTTAGAGGGTGTTGTGTGATTGATGGGGATGACTGTTATGACGAGAGAGGAAGTGAGAGATACCTTGTTTACGATTACATGCCGAATGGAAATCTTGACGACCATTTGTTCCATACACTATTTGATCAAGTTGGAACTGTGAAGAAACGATTGACATGGCCTCAAAGGAAGAACATTATCTTGGATGTGGCAAAAGGCCTAGCTTATCTGCACTATGGGGTGAAACCCGCGATATATCACAGAGATATCAAGGCGACGAACATATTGCTAGATGCAGATATGAGAGCAAGAGTGGCAGATTTCGGGCTCGCCAAACAGAGCAGGGAAGGA 543 41.62 FKIQELDKATDNFSPKNFIGRGGFGLVYKGTLPDGSVVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDCYDERGSERYLVYDYMPNGNLDDHLFHTLFDQVGTVKKRLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREG 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3538678 3539220 + MC10g0440 Mch10g0543 677636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0543 181 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Mch10g0543 181 FunFam Receptor-like serine/threonine-protein kinase At4g25390 1 97 - -
Mch10g0543 181 FunFam Os07g0541700 protein 98 180 - -
Mch10g0543 181 SMART serkin_6 13 180 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0543 181 ProSiteProfiles Protein kinase domain profile. 13 181 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0543 181 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Mch10g0543 181 PANTHER OS01G0750732 PROTEIN 1 178 IPR050885 -
Mch10g0543 181 Gene3D Transferase(Phosphotransferase) domain 1 98 181 - -
Mch10g0543 181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0543 181 Pfam Protein kinase domain 16 179 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0543 181 SUPERFAMILY Protein kinase-like (PK-like) 3 178 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0543 Mch-Chr10:3538678 Mch6g0120 Mch-Chr6:691627 3.13E-50 dispersed
Mch10g0543 Mch-Chr10:3538678 Mch9g0825 Mch-Chr9:6190429 7.83E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77001 PF00069 Pkinase 7.00E-30 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0543 - - - 0.0