Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0545 ATGGAGATGATCAATCACCTCCACTGGCCGGGTGCGGCGGAGAAACTCGACAGCAGCGGAGGGAAGAAGGCGGCCGAGCACGGCAGCAGTTCGGAGGATGACGACGATGAGGAAGAGATGCCGTCGTCGCTGAGCCTCAGAGAGCTCTCCAAGATCATACTTCCGCCGTTGGGAGTTTCCAGTTTCACTGAGCATGCTCAAATCAAGTCCATCAAGTGGATCATCTCTCCCATGAGCTCCAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTCTGGTTGCTTACTCAGCGTGGGTTTATCCATTGGAAGTGGCGTTTGTGGACGCGATTCCCAAGCGGGGATTGTACATTGCAGATAACGTGGTCGATTTCTTCTTCGCCATTGATATCTTCTTGACCTTTTTTGTCGCTTACATCGACCATCGGACTCAGCTTCTGGTTCGTGATTCGAAGAAGATTGCTCGCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCGTCAACAATCCCATTTGAGGCATTGGCCTACTTGTTCACAGGAAAATATGATATTGGTCTCCCATATTCACTTTTGGGCTTGCTCAGATTTTGGCGACTGCGACGTGTCAAGCAATTTTTCACAAGGCTTGAGAAGGACATTAGATTCAGCTACTTCTGGGTTCGATGTGCTAGGCTTCTATCTGTCACATTGTTTTATGTCCATTGTGCTGGATGCCTCTACTACATGTTGGCTGACCGATATCCACATGAAGGAAAGACCTGGATTGGAACTGCGATTCCAAATTTCAAAGAGACTAGCCTTGGAGTGAGATATATTTCAGCCTTATATTGGTCTATCACCACCATGACCACCGTCGGTTATGGTGATCTTCATGCTGTGAACACCATAGAGATGATCTTCATCATTTTCTATATGCTCTTCAATCTTGGCTTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGTCGCACGATGGAATTTAGAGATAGCATTGAAATGGCATCACATTTCGTTAACCGAAACCGCCTGCCTGGAAGGTTGAAGGAACACATATTGGCATACATGTGCTTGAGGTTCAAGGCCGAGAGCCTAAACCAACAACAACTGATCGAACAGCTTCCAAAGTCAATTTGCAAAAGCATCTGTCAGCAATTGTTTTTGCCGACCTTGCAGAAAGTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGCGCTGCTGGTGGCAAAGATAAAAGCCGAGTATATACCACCCAAGGAGGACGTGATAATACAAAACGAGACCCCTGATGATGTTTATATCATTGTGTCTGGGGAAGTTGAAATTATCGACTGTGAGATGGAGGTGGAGCGGACTGTTGGGACCTTACATTGTGGCAGCATGTTTGGGGAAGTTGGAGCACTTTGTTGCAGAAACCAAAATTTTACGTACAGAACCAAAACTCTTTCGCAGCTCTTGAGGCTGAAAACAAGTGTACTACAAGAAGCTATGCATGTCAAACAAGAAGACAGTATAGTCATTGTCAAGAACTTCCTTCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGACGGTTCGCCCGCAAAAGAAGCAGTGCCGGTGTTGAGTGAAGAAAAAGAGCAAAGTTTCAACTGGAAACACTCCATTGAATTAGATTCTGCAAGAGTTAACATATACAAAGGCCATCCAGTAGCCAGAAAGCAGGCTTCTTGTGATGATCCTGGAAAGTTGATCAAATTGCCACATTCAATGGAGGAGCTAAAAAAAGTTGCAGGTGAAAAGTTTGGGTTTGATGCAAGAAATGCTCTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGCTTTTTTTCATAGTTGCAGACGATAAAACTCTGTAA 1926 44.81 MEMINHLHWPGAAEKLDSSGGKKAAEHGSSSEDDDDEEEMPSSLSLRELSKIILPPLGVSSFTEHAQIKSIKWIISPMSSRYRWWQSFMVVLVAYSAWVYPLEVAFVDAIPKRGLYIADNVVDFFFAIDIFLTFFVAYIDHRTQLLVRDSKKIARRYLSTWFLMDLASTIPFEALAYLFTGKYDIGLPYSLLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCLYYMLADRYPHEGKTWIGTAIPNFKETSLGVRYISALYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRDSIEMASHFVNRNRLPGRLKEHILAYMCLRFKAESLNQQQLIEQLPKSICKSICQQLFLPTLQKVYLFKGVSKETLALLVAKIKAEYIPPKEDVIIQNETPDDVYIIVSGEVEIIDCEMEVERTVGTLHCGSMFGEVGALCCRNQNFTYRTKTLSQLLRLKTSVLQEAMHVKQEDSIVIVKNFLQERELSHKITIDGSPAKEAVPVLSEEKEQSFNWKHSIELDSARVNIYKGHPVARKQASCDDPGKLIKLPHSMEELKKVAGEKFGFDARNALLTNEEGSEIDSIDVIRDNDKLFFIVADDKTL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3574706 3582251 + MC10g0442 Mch10g0545 677638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0545 641 SUPERFAMILY Voltage-gated potassium channels 77 325 - -
Mch10g0545 641 Gene3D - 83 325 - -
Mch10g0545 641 Pfam Ion transport protein 82 331 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0545 641 SUPERFAMILY cAMP-binding domain-like 329 518 IPR018490 -
Mch10g0545 641 CDD CAP_ED 402 505 IPR000595 -
Mch10g0545 641 FunFam Potassium channel KAT2 390 525 - -
Mch10g0545 641 Pfam Cyclic nucleotide-binding domain 422 504 IPR000595 -
Mch10g0545 641 ProSiteProfiles KHA domain profile. 562 641 IPR021789 -
Mch10g0545 641 FunFam Potassium channel KAT3 84 326 - -
Mch10g0545 641 Pfam KHA, dimerisation domain of potassium ion channel 562 633 IPR021789 -
Mch10g0545 641 ProSiteProfiles cAMP/cGMP binding motif profile. 402 521 IPR000595 -
Mch10g0545 641 Gene3D Jelly Rolls 369 537 IPR014710 -
Mch10g0545 641 PANTHER POTASSIUM CHANNEL AKT1 37 527 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Mch10g0545 641 PRINTS EAG/ELK/ERG potassium channel family signature 316 325 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch10g0545 641 PRINTS EAG/ELK/ERG potassium channel family signature 119 129 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch10g0545 641 PRINTS EAG/ELK/ERG potassium channel family signature 298 309 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch10g0545 641 PRINTS EAG/ELK/ERG potassium channel family signature 272 289 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch10g0545 641 PRINTS EAG/ELK/ERG potassium channel family signature 130 139 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch10g0545 641 SMART cnmp_10 402 519 IPR000595 -
Mch10g0545 641 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0545 Mch-Chr10:3574706 Mch3g1015 Mch-Chr3:13843360 2.80E-172 dispersed
Mch10g0545 Mch-Chr10:3574706 Mch6g1858 Mch-Chr6:21088339 1.62E-10 transposed
Mch10g0545 Mch-Chr10:3574706 Mch5g0470 Mch-Chr5:3180785 1.60E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0545 K21867 - csv:101205212 1064.68